Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06580 and PGA1_c06590 are separated by 131 nucleotides PGA1_c06590 and PGA1_c06600 overlap by 4 nucleotides PGA1_c06600 and PGA1_c06610 are separated by 1 nucleotides
PGA1_c06580: PGA1_c06580 - ketol-acid reductoisomerase IlvC, at 676,463 to 677,485
_c06580
PGA1_c06590: PGA1_c06590 - putative transcriptional regulator, AsnC family, at 677,617 to 678,072
_c06590
PGA1_c06600: PGA1_c06600 - putative transcriptional regulator, AsnC family, at 678,069 to 678,527
_c06600
PGA1_c06610: PGA1_c06610 - hypothetical protein, at 678,529 to 679,221
_c06610
Position (kb) 677
678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 677.696 kb on + strand, within PGA1_c06590 at 677.981 kb on - strand, within PGA1_c06590 at 677.989 kb on + strand, within PGA1_c06590 at 677.989 kb on + strand, within PGA1_c06590 at 677.997 kb on - strand, within PGA1_c06590 at 678.475 kb on - strand, within PGA1_c06600 at 678.526 kb on + strand at 678.526 kb on + strand at 678.526 kb on + strand at 678.546 kb on + strand at 678.615 kb on + strand, within PGA1_c06610 at 678.615 kb on + strand, within PGA1_c06610 at 678.616 kb on + strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.644 kb on + strand, within PGA1_c06610 at 678.682 kb on - strand, within PGA1_c06610 at 678.706 kb on - strand, within PGA1_c06610 at 678.780 kb on + strand, within PGA1_c06610 at 678.815 kb on + strand, within PGA1_c06610 at 678.819 kb on + strand, within PGA1_c06610 at 678.823 kb on - strand, within PGA1_c06610 at 678.826 kb on + strand, within PGA1_c06610 at 678.859 kb on - strand, within PGA1_c06610 at 678.861 kb on - strand, within PGA1_c06610 at 678.870 kb on + strand, within PGA1_c06610 at 678.947 kb on + strand, within PGA1_c06610 at 678.950 kb on - strand, within PGA1_c06610 at 679.019 kb on - strand, within PGA1_c06610 at 679.043 kb on - strand, within PGA1_c06610 at 679.046 kb on + strand, within PGA1_c06610 at 679.059 kb on - strand, within PGA1_c06610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 677,696 + PGA1_c06590 0.17 -0.3 677,981 - PGA1_c06590 0.80 -1.5 677,989 + PGA1_c06590 0.82 -2.5 677,989 + PGA1_c06590 0.82 -2.2 677,997 - PGA1_c06590 0.83 -0.4 678,475 - PGA1_c06600 0.88 -2.2 678,526 + +0.9 678,526 + +1.5 678,526 + +0.6 678,546 + +1.2 678,615 + PGA1_c06610 0.12 +0.3 678,615 + PGA1_c06610 0.12 -0.4 678,616 + PGA1_c06610 0.13 +0.5 678,623 - PGA1_c06610 0.14 -0.2 678,623 - PGA1_c06610 0.14 -0.7 678,624 - PGA1_c06610 0.14 +0.1 678,624 - PGA1_c06610 0.14 -0.4 678,644 + PGA1_c06610 0.17 +0.8 678,682 - PGA1_c06610 0.22 -1.4 678,706 - PGA1_c06610 0.26 +0.2 678,780 + PGA1_c06610 0.36 -0.7 678,815 + PGA1_c06610 0.41 -0.8 678,819 + PGA1_c06610 0.42 -0.7 678,823 - PGA1_c06610 0.42 -2.8 678,826 + PGA1_c06610 0.43 -1.0 678,859 - PGA1_c06610 0.48 +1.6 678,861 - PGA1_c06610 0.48 -0.5 678,870 + PGA1_c06610 0.49 +0.5 678,947 + PGA1_c06610 0.60 +0.6 678,950 - PGA1_c06610 0.61 -0.2 679,019 - PGA1_c06610 0.71 -1.1 679,043 - PGA1_c06610 0.74 -0.3 679,046 + PGA1_c06610 0.75 +0.2 679,059 - PGA1_c06610 0.76 +0.5
Or see this region's nucleotide sequence