Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06420

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06400 and PGA1_c06410 are separated by 9 nucleotidesPGA1_c06410 and PGA1_c06420 are separated by 207 nucleotidesPGA1_c06420 and PGA1_c06430 are separated by 96 nucleotidesPGA1_c06430 and PGA1_c06440 are separated by 121 nucleotides PGA1_c06400: PGA1_c06400 - putative antibiotic acetyltransferase, at 655,955 to 656,596 _c06400 PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211 _c06410 PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928 _c06420 PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804 _c06430 PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456 _c06440 Position (kb) 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1at 656.497 kb on - strand, within PGA1_c06400at 656.529 kb on - strand, within PGA1_c06400at 656.565 kb on - strandat 656.581 kb on + strandat 656.594 kb on - strandat 656.644 kb on + strandat 656.695 kb on + strand, within PGA1_c06410at 656.761 kb on + strand, within PGA1_c06410at 656.772 kb on + strand, within PGA1_c06410at 656.772 kb on + strand, within PGA1_c06410at 656.790 kb on - strand, within PGA1_c06410at 656.941 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.066 kb on - strand, within PGA1_c06410at 657.066 kb on - strand, within PGA1_c06410at 657.193 kb on + strandat 657.201 kb on - strandat 657.273 kb on - strandat 657.299 kb on - strandat 657.299 kb on - strandat 657.301 kb on + strandat 657.309 kb on - strandat 657.309 kb on - strandat 657.372 kb on + strandat 657.411 kb on + strandat 657.441 kb on + strandat 657.468 kb on - strandat 657.521 kb on - strand, within PGA1_c06420at 657.557 kb on - strand, within PGA1_c06420at 657.641 kb on - strand, within PGA1_c06420at 657.641 kb on - strand, within PGA1_c06420at 657.646 kb on - strand, within PGA1_c06420at 657.712 kb on - strand, within PGA1_c06420at 657.714 kb on + strand, within PGA1_c06420at 657.815 kb on - strand, within PGA1_c06420at 657.857 kb on - strand, within PGA1_c06420at 657.862 kb on + strand, within PGA1_c06420at 657.876 kb on - strand, within PGA1_c06420at 657.896 kb on - strandat 657.898 kb on + strandat 658.052 kb on + strandat 658.052 kb on + strandat 658.057 kb on + strandat 658.060 kb on - strandat 658.065 kb on - strandat 658.065 kb on - strandat 658.065 kb on - strandat 658.229 kb on - strand, within PGA1_c06430at 658.459 kb on + strand, within PGA1_c06430at 658.467 kb on + strand, within PGA1_c06430at 658.475 kb on - strand, within PGA1_c06430at 658.549 kb on + strand, within PGA1_c06430at 658.562 kb on + strand, within PGA1_c06430at 658.570 kb on - strand, within PGA1_c06430at 658.599 kb on + strand, within PGA1_c06430at 658.654 kb on + strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.786 kb on - strandat 658.825 kb on - strandat 658.835 kb on + strandat 658.840 kb on + strandat 658.876 kb on + strandat 658.884 kb on - strandat 658.907 kb on + strandat 658.907 kb on + strandat 658.915 kb on + strandat 658.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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656,497 - PGA1_c06400 0.84 +1.0
656,529 - PGA1_c06400 0.89 +0.4
656,565 - -0.2
656,581 + -0.5
656,594 - -0.2
656,644 + +0.1
656,695 + PGA1_c06410 0.15 -0.2
656,761 + PGA1_c06410 0.26 -1.9
656,772 + PGA1_c06410 0.27 +1.6
656,772 + PGA1_c06410 0.27 -2.4
656,790 - PGA1_c06410 0.30 -0.4
656,941 + PGA1_c06410 0.55 -0.3
657,058 + PGA1_c06410 0.75 +0.5
657,058 + PGA1_c06410 0.75 +0.5
657,058 + PGA1_c06410 0.75 -0.1
657,058 + PGA1_c06410 0.75 -0.5
657,058 + PGA1_c06410 0.75 -1.5
657,066 - PGA1_c06410 0.76 -1.2
657,066 - PGA1_c06410 0.76 -1.1
657,193 + -0.6
657,201 - -1.0
657,273 - -1.0
657,299 - -0.6
657,299 - +0.0
657,301 + -2.9
657,309 - -0.4
657,309 - -1.6
657,372 + +1.3
657,411 + +0.4
657,441 + -0.9
657,468 - -2.6
657,521 - PGA1_c06420 0.20 -0.2
657,557 - PGA1_c06420 0.27 -2.8
657,641 - PGA1_c06420 0.44 -2.9
657,641 - PGA1_c06420 0.44 -2.6
657,646 - PGA1_c06420 0.45 +0.1
657,712 - PGA1_c06420 0.57 -0.3
657,714 + PGA1_c06420 0.58 -0.7
657,815 - PGA1_c06420 0.78 -1.4
657,857 - PGA1_c06420 0.86 -0.6
657,862 + PGA1_c06420 0.87 -0.3
657,876 - PGA1_c06420 0.90 -0.6
657,896 - -2.5
657,898 + -0.4
658,052 + -1.2
658,052 + +0.1
658,057 + -1.8
658,060 - -0.1
658,065 - -0.9
658,065 - -1.2
658,065 - +1.4
658,229 - PGA1_c06430 0.26 +0.1
658,459 + PGA1_c06430 0.56 +0.8
658,467 + PGA1_c06430 0.57 -0.6
658,475 - PGA1_c06430 0.58 -0.8
658,549 + PGA1_c06430 0.67 -0.9
658,562 + PGA1_c06430 0.69 -1.5
658,570 - PGA1_c06430 0.70 -2.2
658,599 + PGA1_c06430 0.74 +0.8
658,654 + PGA1_c06430 0.81 -0.1
658,721 - PGA1_c06430 0.89 -0.1
658,721 - PGA1_c06430 0.89 +1.4
658,786 - -1.3
658,825 - -1.1
658,835 + +0.4
658,840 + +0.4
658,876 + -0.5
658,884 - +0.9
658,907 + +0.8
658,907 + -1.1
658,915 + +1.7
658,915 + -1.4

Or see this region's nucleotide sequence