Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06080

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06060 and PGA1_c06070 are separated by 19 nucleotidesPGA1_c06070 and PGA1_c06080 are separated by 40 nucleotidesPGA1_c06080 and PGA1_c06090 are separated by 3 nucleotidesPGA1_c06090 and PGA1_c06100 are separated by 10 nucleotides PGA1_c06060: PGA1_c06060 - Flp pilus assembly protein, protease CpaA, at 620,846 to 621,352 _c06060 PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847 _c06090 PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826 _c06100 Position (kb) 622 623Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 621.265 kb on - strand, within PGA1_c06060at 621.294 kb on - strand, within PGA1_c06060at 621.494 kb on + strand, within PGA1_c06070at 621.534 kb on - strand, within PGA1_c06070at 621.672 kb on - strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.682 kb on - strand, within PGA1_c06070at 621.725 kb on - strand, within PGA1_c06070at 621.737 kb on + strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.755 kb on - strand, within PGA1_c06070at 621.831 kb on - strand, within PGA1_c06070at 621.844 kb on + strand, within PGA1_c06070at 621.852 kb on - strand, within PGA1_c06070at 621.961 kb on - strand, within PGA1_c06070at 621.966 kb on - strand, within PGA1_c06070at 621.997 kb on + strand, within PGA1_c06070at 622.004 kb on + strand, within PGA1_c06070at 622.005 kb on - strand, within PGA1_c06070at 622.040 kb on + strand, within PGA1_c06070at 622.087 kb on - strand, within PGA1_c06070at 622.155 kb on - strandat 622.172 kb on + strandat 622.230 kb on + strandat 622.235 kb on + strandat 622.245 kb on + strandat 622.253 kb on - strandat 622.253 kb on - strandat 622.355 kb on - strand, within PGA1_c06080at 622.467 kb on + strand, within PGA1_c06080at 622.505 kb on + strand, within PGA1_c06080at 622.535 kb on + strand, within PGA1_c06080at 622.553 kb on - strand, within PGA1_c06080at 622.579 kb on - strand, within PGA1_c06080at 622.601 kb on - strand, within PGA1_c06080at 622.626 kb on + strand, within PGA1_c06080at 622.635 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.737 kb on - strand, within PGA1_c06080at 622.844 kb on + strandat 622.895 kb on - strandat 622.900 kb on - strandat 622.905 kb on - strandat 622.918 kb on - strandat 622.941 kb on + strandat 622.949 kb on - strandat 623.007 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.128 kb on - strand, within PGA1_c06090at 623.153 kb on + strand, within PGA1_c06090at 623.222 kb on - strand, within PGA1_c06090at 623.244 kb on - strand, within PGA1_c06090at 623.256 kb on + strand, within PGA1_c06090at 623.292 kb on - strand, within PGA1_c06090at 623.374 kb on + strand, within PGA1_c06090at 623.381 kb on - strand, within PGA1_c06090at 623.425 kb on + strand, within PGA1_c06090at 623.456 kb on + strand, within PGA1_c06090at 623.464 kb on - strand, within PGA1_c06090at 623.466 kb on + strand, within PGA1_c06090at 623.474 kb on - strand, within PGA1_c06090at 623.487 kb on + strand, within PGA1_c06090at 623.502 kb on + strand, within PGA1_c06090at 623.567 kb on + strand, within PGA1_c06090at 623.575 kb on - strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.640 kb on - strand, within PGA1_c06090at 623.668 kb on + strand, within PGA1_c06090at 623.671 kb on - strand, within PGA1_c06090at 623.676 kb on - strand, within PGA1_c06090at 623.724 kb on + strand, within PGA1_c06090at 623.798 kb on + strandat 623.808 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
621,265 - PGA1_c06060 0.83 +2.0
621,294 - PGA1_c06060 0.88 -1.0
621,494 + PGA1_c06070 0.14 -1.0
621,534 - PGA1_c06070 0.19 +1.0
621,672 - PGA1_c06070 0.35 +0.4
621,674 + PGA1_c06070 0.36 -0.6
621,674 + PGA1_c06070 0.36 +0.4
621,682 - PGA1_c06070 0.37 +0.3
621,725 - PGA1_c06070 0.42 +1.0
621,737 + PGA1_c06070 0.43 +0.3
621,745 - PGA1_c06070 0.44 +0.0
621,745 - PGA1_c06070 0.44 +0.3
621,755 - PGA1_c06070 0.45 +1.0
621,831 - PGA1_c06070 0.54 +1.0
621,844 + PGA1_c06070 0.56 -0.6
621,852 - PGA1_c06070 0.57 +1.0
621,961 - PGA1_c06070 0.69 -0.6
621,966 - PGA1_c06070 0.70 +1.3
621,997 + PGA1_c06070 0.74 +1.0
622,004 + PGA1_c06070 0.74 +0.2
622,005 - PGA1_c06070 0.75 +2.0
622,040 + PGA1_c06070 0.79 +0.0
622,087 - PGA1_c06070 0.84 +3.0
622,155 - +1.0
622,172 + +0.7
622,230 + +1.0
622,235 + -1.0
622,245 + +0.7
622,253 - +0.4
622,253 - +0.0
622,355 - PGA1_c06080 0.16 +1.6
622,467 + PGA1_c06080 0.34 +1.6
622,505 + PGA1_c06080 0.40 -1.6
622,535 + PGA1_c06080 0.45 +0.1
622,553 - PGA1_c06080 0.48 +1.0
622,579 - PGA1_c06080 0.53 +1.0
622,601 - PGA1_c06080 0.56 +1.7
622,626 + PGA1_c06080 0.61 +0.8
622,635 - PGA1_c06080 0.62 +1.0
622,721 - PGA1_c06080 0.76 +2.0
622,721 - PGA1_c06080 0.76 +0.5
622,737 - PGA1_c06080 0.79 +0.7
622,844 + +2.3
622,895 - +0.4
622,900 - +0.0
622,905 - +2.0
622,918 - +0.5
622,941 + +3.8
622,949 - -0.8
623,007 + PGA1_c06090 0.14 +1.0
623,033 + PGA1_c06090 0.17 +0.4
623,033 + PGA1_c06090 0.17 -0.6
623,033 + PGA1_c06090 0.17 +0.0
623,041 - PGA1_c06090 0.18 -0.6
623,041 - PGA1_c06090 0.18 +0.0
623,041 - PGA1_c06090 0.18 +0.0
623,041 - PGA1_c06090 0.18 -0.6
623,041 - PGA1_c06090 0.18 -1.0
623,128 - PGA1_c06090 0.27 +1.0
623,153 + PGA1_c06090 0.29 -0.3
623,222 - PGA1_c06090 0.36 +2.0
623,244 - PGA1_c06090 0.38 -1.6
623,256 + PGA1_c06090 0.40 +1.0
623,292 - PGA1_c06090 0.43 +1.0
623,374 + PGA1_c06090 0.52 -0.8
623,381 - PGA1_c06090 0.52 +0.0
623,425 + PGA1_c06090 0.57 -1.3
623,456 + PGA1_c06090 0.60 +0.4
623,464 - PGA1_c06090 0.61 +2.3
623,466 + PGA1_c06090 0.61 -1.3
623,474 - PGA1_c06090 0.62 +0.4
623,487 + PGA1_c06090 0.63 -1.0
623,502 + PGA1_c06090 0.65 -0.7
623,567 + PGA1_c06090 0.71 +1.7
623,575 - PGA1_c06090 0.72 +0.6
623,577 + PGA1_c06090 0.72 +1.0
623,577 + PGA1_c06090 0.72 +1.0
623,640 - PGA1_c06090 0.79 +1.0
623,668 + PGA1_c06090 0.82 +0.0
623,671 - PGA1_c06090 0.82 -2.5
623,676 - PGA1_c06090 0.82 +1.0
623,724 + PGA1_c06090 0.87 +0.6
623,798 + +1.0
623,808 - -0.6

Or see this region's nucleotide sequence