Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06040

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06020 and PGA1_c06030 are separated by 85 nucleotidesPGA1_c06030 and PGA1_c06040 are separated by 52 nucleotidesPGA1_c06040 and PGA1_c06050 are separated by 74 nucleotides PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032 _c06020 PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 616,118 to 616,792 _c06030 PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated (from data), at 616,845 to 619,280 _c06040 PGA1_c06050: PGA1_c06050 - hypothetical protein, at 619,355 to 620,662 _c06050 Position (kb) 616 617 618 619 620Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 615.850 kb on - strand, within PGA1_c06020at 615.916 kb on + strand, within PGA1_c06020at 616.061 kb on - strandat 616.144 kb on - strandat 616.162 kb on + strandat 616.181 kb on + strandat 616.250 kb on - strand, within PGA1_c06030at 616.303 kb on + strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.420 kb on - strand, within PGA1_c06030at 616.448 kb on + strand, within PGA1_c06030at 616.485 kb on + strand, within PGA1_c06030at 616.490 kb on - strand, within PGA1_c06030at 616.667 kb on - strand, within PGA1_c06030at 616.728 kb on - strandat 616.728 kb on - strandat 616.757 kb on - strandat 616.765 kb on - strandat 616.787 kb on + strandat 616.795 kb on - strandat 616.904 kb on - strandat 617.014 kb on + strandat 617.048 kb on + strandat 617.072 kb on - strandat 617.179 kb on + strand, within PGA1_c06040at 617.179 kb on + strand, within PGA1_c06040at 617.187 kb on - strand, within PGA1_c06040at 617.189 kb on + strand, within PGA1_c06040at 617.189 kb on + strand, within PGA1_c06040at 617.312 kb on + strand, within PGA1_c06040at 617.341 kb on + strand, within PGA1_c06040at 617.341 kb on + strand, within PGA1_c06040at 617.349 kb on - strand, within PGA1_c06040at 617.376 kb on + strand, within PGA1_c06040at 617.417 kb on + strand, within PGA1_c06040at 617.425 kb on - strand, within PGA1_c06040at 617.431 kb on - strand, within PGA1_c06040at 617.435 kb on - strand, within PGA1_c06040at 617.520 kb on + strand, within PGA1_c06040at 617.527 kb on + strand, within PGA1_c06040at 617.549 kb on + strand, within PGA1_c06040at 617.557 kb on - strand, within PGA1_c06040at 617.563 kb on + strand, within PGA1_c06040at 617.630 kb on + strand, within PGA1_c06040at 617.638 kb on - strand, within PGA1_c06040at 617.638 kb on - strand, within PGA1_c06040at 617.699 kb on + strand, within PGA1_c06040at 617.705 kb on - strand, within PGA1_c06040at 617.730 kb on + strand, within PGA1_c06040at 617.732 kb on - strand, within PGA1_c06040at 617.738 kb on - strand, within PGA1_c06040at 617.802 kb on + strand, within PGA1_c06040at 617.937 kb on + strand, within PGA1_c06040at 618.054 kb on - strand, within PGA1_c06040at 618.131 kb on + strand, within PGA1_c06040at 618.211 kb on - strand, within PGA1_c06040at 618.332 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.358 kb on - strand, within PGA1_c06040at 618.364 kb on + strand, within PGA1_c06040at 618.372 kb on - strand, within PGA1_c06040at 618.388 kb on + strand, within PGA1_c06040at 618.436 kb on - strand, within PGA1_c06040at 618.546 kb on - strand, within PGA1_c06040at 618.555 kb on - strand, within PGA1_c06040at 618.705 kb on + strand, within PGA1_c06040at 618.752 kb on + strand, within PGA1_c06040at 618.760 kb on - strand, within PGA1_c06040at 618.847 kb on - strand, within PGA1_c06040at 618.889 kb on - strand, within PGA1_c06040at 618.889 kb on - strand, within PGA1_c06040at 618.904 kb on - strand, within PGA1_c06040at 618.969 kb on + strand, within PGA1_c06040at 619.016 kb on + strand, within PGA1_c06040at 619.024 kb on - strand, within PGA1_c06040at 619.285 kb on + strandat 619.356 kb on + strandat 619.367 kb on + strandat 619.411 kb on + strandat 619.411 kb on + strandat 619.455 kb on + strandat 619.455 kb on + strandat 619.455 kb on + strandat 619.552 kb on + strand, within PGA1_c06050at 619.560 kb on - strand, within PGA1_c06050at 619.652 kb on - strand, within PGA1_c06050at 619.782 kb on + strand, within PGA1_c06050at 619.865 kb on - strand, within PGA1_c06050at 619.912 kb on - strand, within PGA1_c06050at 619.943 kb on - strand, within PGA1_c06050at 620.022 kb on + strand, within PGA1_c06050at 620.066 kb on + strand, within PGA1_c06050at 620.074 kb on - strand, within PGA1_c06050at 620.172 kb on - strand, within PGA1_c06050at 620.202 kb on + strand, within PGA1_c06050at 620.203 kb on + strand, within PGA1_c06050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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615,850 - PGA1_c06020 0.55 -0.7
615,916 + PGA1_c06020 0.72 -0.4
616,061 - +0.6
616,144 - +1.8
616,162 + +0.3
616,181 + +0.2
616,250 - PGA1_c06030 0.20 +1.2
616,303 + PGA1_c06030 0.27 -1.3
616,310 - PGA1_c06030 0.28 +0.0
616,310 - PGA1_c06030 0.28 +1.0
616,310 - PGA1_c06030 0.28 +1.0
616,420 - PGA1_c06030 0.45 -1.8
616,448 + PGA1_c06030 0.49 +1.4
616,485 + PGA1_c06030 0.54 -0.1
616,490 - PGA1_c06030 0.55 +0.6
616,667 - PGA1_c06030 0.81 +1.2
616,728 - +0.0
616,728 - -0.6
616,757 - -1.6
616,765 - +0.2
616,787 + +1.6
616,795 - +0.0
616,904 - -0.3
617,014 + -0.8
617,048 + +1.3
617,072 - -0.2
617,179 + PGA1_c06040 0.14 +0.3
617,179 + PGA1_c06040 0.14 +1.3
617,187 - PGA1_c06040 0.14 +1.3
617,189 + PGA1_c06040 0.14 +0.3
617,189 + PGA1_c06040 0.14 +2.0
617,312 + PGA1_c06040 0.19 +2.6
617,341 + PGA1_c06040 0.20 +0.0
617,341 + PGA1_c06040 0.20 +0.3
617,349 - PGA1_c06040 0.21 -0.2
617,376 + PGA1_c06040 0.22 +2.0
617,417 + PGA1_c06040 0.23 +1.0
617,425 - PGA1_c06040 0.24 +1.3
617,431 - PGA1_c06040 0.24 +2.6
617,435 - PGA1_c06040 0.24 +1.0
617,520 + PGA1_c06040 0.28 +2.4
617,527 + PGA1_c06040 0.28 +2.0
617,549 + PGA1_c06040 0.29 -1.3
617,557 - PGA1_c06040 0.29 +2.2
617,563 + PGA1_c06040 0.29 +0.0
617,630 + PGA1_c06040 0.32 -0.2
617,638 - PGA1_c06040 0.33 +2.0
617,638 - PGA1_c06040 0.33 +1.4
617,699 + PGA1_c06040 0.35 +0.0
617,705 - PGA1_c06040 0.35 +1.2
617,730 + PGA1_c06040 0.36 +2.4
617,732 - PGA1_c06040 0.36 +1.0
617,738 - PGA1_c06040 0.37 +0.4
617,802 + PGA1_c06040 0.39 +3.8
617,937 + PGA1_c06040 0.45 +1.7
618,054 - PGA1_c06040 0.50 +0.2
618,131 + PGA1_c06040 0.53 +1.0
618,211 - PGA1_c06040 0.56 +0.3
618,332 - PGA1_c06040 0.61 +0.7
618,358 - PGA1_c06040 0.62 +0.0
618,358 - PGA1_c06040 0.62 -0.3
618,358 - PGA1_c06040 0.62 +3.0
618,358 - PGA1_c06040 0.62 -0.5
618,364 + PGA1_c06040 0.62 +1.4
618,372 - PGA1_c06040 0.63 +0.6
618,388 + PGA1_c06040 0.63 +1.3
618,436 - PGA1_c06040 0.65 -0.3
618,546 - PGA1_c06040 0.70 +0.4
618,555 - PGA1_c06040 0.70 -1.2
618,705 + PGA1_c06040 0.76 -0.7
618,752 + PGA1_c06040 0.78 -1.3
618,760 - PGA1_c06040 0.79 +1.3
618,847 - PGA1_c06040 0.82 -1.0
618,889 - PGA1_c06040 0.84 +1.0
618,889 - PGA1_c06040 0.84 +3.0
618,904 - PGA1_c06040 0.85 +1.4
618,969 + PGA1_c06040 0.87 +0.6
619,016 + PGA1_c06040 0.89 +1.4
619,024 - PGA1_c06040 0.89 +0.4
619,285 + +2.3
619,356 + +0.3
619,367 + +3.0
619,411 + +1.3
619,411 + +0.4
619,455 + -0.6
619,455 + +1.0
619,455 + +1.6
619,552 + PGA1_c06050 0.15 +0.0
619,560 - PGA1_c06050 0.16 +0.0
619,652 - PGA1_c06050 0.23 +0.0
619,782 + PGA1_c06050 0.33 +0.0
619,865 - PGA1_c06050 0.39 -0.8
619,912 - PGA1_c06050 0.43 -0.6
619,943 - PGA1_c06050 0.45 +2.0
620,022 + PGA1_c06050 0.51 -0.7
620,066 + PGA1_c06050 0.54 +0.0
620,074 - PGA1_c06050 0.55 -1.0
620,172 - PGA1_c06050 0.62 +0.6
620,202 + PGA1_c06050 0.65 +0.0
620,203 + PGA1_c06050 0.65 -0.8

Or see this region's nucleotide sequence