Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05480 and PGA1_c05490 are separated by 43 nucleotides PGA1_c05490 and PGA1_c05500 are separated by 135 nucleotides
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
PGA1_c05490: PGA1_c05490 - ureidoglycolate hydrolase AllA, at 561,070 to 561,555
_c05490
PGA1_c05500: PGA1_c05500 - putative purine permease, at 561,691 to 563,118
_c05500
Position (kb) 561
562 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 560.077 kb on + strand, within PGA1_c05480 at 560.170 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.335 kb on - strand, within PGA1_c05480 at 560.532 kb on + strand, within PGA1_c05480 at 560.596 kb on - strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.714 kb on - strand, within PGA1_c05480 at 560.757 kb on - strand, within PGA1_c05480 at 560.779 kb on - strand, within PGA1_c05480 at 560.786 kb on + strand, within PGA1_c05480 at 560.838 kb on - strand, within PGA1_c05480 at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.931 kb on - strand at 560.931 kb on - strand at 560.931 kb on - strand at 561.023 kb on - strand at 561.025 kb on + strand at 561.028 kb on - strand at 561.038 kb on + strand at 561.046 kb on - strand at 561.106 kb on - strand at 561.107 kb on + strand at 561.168 kb on + strand, within PGA1_c05490 at 561.207 kb on - strand, within PGA1_c05490 at 561.237 kb on + strand, within PGA1_c05490 at 561.261 kb on + strand, within PGA1_c05490 at 561.284 kb on - strand, within PGA1_c05490 at 561.307 kb on + strand, within PGA1_c05490 at 561.334 kb on - strand, within PGA1_c05490 at 561.350 kb on + strand, within PGA1_c05490 at 561.355 kb on + strand, within PGA1_c05490 at 561.375 kb on - strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.434 kb on + strand, within PGA1_c05490 at 561.514 kb on + strand at 561.530 kb on + strand at 561.583 kb on - strand at 561.645 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.713 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.761 kb on - strand at 561.761 kb on - strand at 561.789 kb on + strand at 561.792 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.914 kb on - strand, within PGA1_c05500 at 561.920 kb on + strand, within PGA1_c05500 at 561.976 kb on + strand, within PGA1_c05500 at 561.979 kb on - strand, within PGA1_c05500 at 561.984 kb on - strand, within PGA1_c05500 at 562.037 kb on - strand, within PGA1_c05500 at 562.056 kb on + strand, within PGA1_c05500 at 562.056 kb on + strand, within PGA1_c05500 at 562.056 kb on + strand, within PGA1_c05500 at 562.124 kb on - strand, within PGA1_c05500 at 562.169 kb on + strand, within PGA1_c05500 at 562.169 kb on + strand, within PGA1_c05500 at 562.179 kb on + strand, within PGA1_c05500 at 562.187 kb on - strand, within PGA1_c05500 at 562.256 kb on + strand, within PGA1_c05500 at 562.286 kb on + strand, within PGA1_c05500 at 562.286 kb on + strand, within PGA1_c05500 at 562.291 kb on + strand, within PGA1_c05500 at 562.383 kb on + strand, within PGA1_c05500 at 562.383 kb on + strand, within PGA1_c05500 at 562.391 kb on - strand, within PGA1_c05500 at 562.420 kb on + strand, within PGA1_c05500 at 562.427 kb on + strand, within PGA1_c05500 at 562.435 kb on - strand, within PGA1_c05500 at 562.481 kb on + strand, within PGA1_c05500 at 562.509 kb on - strand, within PGA1_c05500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 560,077 + PGA1_c05480 0.33 +0.3 560,170 + PGA1_c05480 0.39 -0.0 560,317 + PGA1_c05480 0.50 -0.2 560,317 + PGA1_c05480 0.50 -0.4 560,317 + PGA1_c05480 0.50 -1.5 560,317 + PGA1_c05480 0.50 -2.0 560,317 + PGA1_c05480 0.50 -2.2 560,317 + PGA1_c05480 0.50 -0.9 560,325 - PGA1_c05480 0.50 +1.5 560,325 - PGA1_c05480 0.50 +1.6 560,325 - PGA1_c05480 0.50 +1.3 560,327 + PGA1_c05480 0.51 +2.3 560,327 + PGA1_c05480 0.51 +0.5 560,327 + PGA1_c05480 0.51 -1.6 560,327 + PGA1_c05480 0.51 -1.6 560,327 + PGA1_c05480 0.51 -2.4 560,327 + PGA1_c05480 0.51 +0.4 560,335 - PGA1_c05480 0.51 +1.7 560,532 + PGA1_c05480 0.65 +0.7 560,596 - PGA1_c05480 0.70 +0.6 560,631 + PGA1_c05480 0.72 -0.1 560,631 + PGA1_c05480 0.72 -1.1 560,631 + PGA1_c05480 0.72 -0.8 560,639 - PGA1_c05480 0.73 -1.7 560,639 - PGA1_c05480 0.73 +0.3 560,639 - PGA1_c05480 0.73 -0.0 560,714 - PGA1_c05480 0.78 +0.8 560,757 - PGA1_c05480 0.81 +1.0 560,779 - PGA1_c05480 0.82 +0.2 560,786 + PGA1_c05480 0.83 +1.0 560,838 - PGA1_c05480 0.87 +0.5 560,923 + +0.8 560,923 + +0.1 560,923 + +1.9 560,923 + -1.0 560,923 + +0.2 560,931 - +0.2 560,931 - -1.5 560,931 - +1.0 561,023 - +2.6 561,025 + -0.1 561,028 - -0.4 561,038 + +0.4 561,046 - +2.4 561,106 - +0.8 561,107 + +1.0 561,168 + PGA1_c05490 0.20 -0.8 561,207 - PGA1_c05490 0.28 -1.8 561,237 + PGA1_c05490 0.34 -1.6 561,261 + PGA1_c05490 0.39 +1.4 561,284 - PGA1_c05490 0.44 -1.8 561,307 + PGA1_c05490 0.49 +1.4 561,334 - PGA1_c05490 0.54 -0.6 561,350 + PGA1_c05490 0.58 +1.2 561,355 + PGA1_c05490 0.59 -0.8 561,375 - PGA1_c05490 0.63 +2.0 561,416 + PGA1_c05490 0.71 -0.0 561,416 + PGA1_c05490 0.71 +0.6 561,434 + PGA1_c05490 0.75 +1.0 561,514 + -0.8 561,530 + -1.4 561,583 - -1.8 561,645 - +0.2 561,689 - +0.1 561,689 - -0.0 561,689 - +2.0 561,713 + -0.4 561,753 + +2.0 561,753 + +2.8 561,753 + -1.4 561,761 - -0.6 561,761 - -0.6 561,789 + -0.3 561,792 - +1.0 561,797 - -1.4 561,797 - -0.0 561,853 + PGA1_c05500 0.11 +0.4 561,853 + PGA1_c05500 0.11 +1.0 561,853 + PGA1_c05500 0.11 -1.0 561,853 + PGA1_c05500 0.11 +0.1 561,853 + PGA1_c05500 0.11 -2.0 561,861 - PGA1_c05500 0.12 -2.2 561,861 - PGA1_c05500 0.12 +0.2 561,914 - PGA1_c05500 0.16 +0.4 561,920 + PGA1_c05500 0.16 +0.3 561,976 + PGA1_c05500 0.20 +0.4 561,979 - PGA1_c05500 0.20 +0.9 561,984 - PGA1_c05500 0.21 +1.0 562,037 - PGA1_c05500 0.24 -0.6 562,056 + PGA1_c05500 0.26 +0.3 562,056 + PGA1_c05500 0.26 -0.5 562,056 + PGA1_c05500 0.26 -0.7 562,124 - PGA1_c05500 0.30 +0.6 562,169 + PGA1_c05500 0.33 +0.7 562,169 + PGA1_c05500 0.33 -1.0 562,179 + PGA1_c05500 0.34 +1.3 562,187 - PGA1_c05500 0.35 +0.5 562,256 + PGA1_c05500 0.40 -0.1 562,286 + PGA1_c05500 0.42 +1.8 562,286 + PGA1_c05500 0.42 -1.0 562,291 + PGA1_c05500 0.42 +0.4 562,383 + PGA1_c05500 0.48 -0.0 562,383 + PGA1_c05500 0.48 -0.0 562,391 - PGA1_c05500 0.49 -0.3 562,420 + PGA1_c05500 0.51 +1.2 562,427 + PGA1_c05500 0.52 +1.0 562,435 - PGA1_c05500 0.52 -0.2 562,481 + PGA1_c05500 0.55 -0.8 562,509 - PGA1_c05500 0.57 -0.7
Or see this region's nucleotide sequence