Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0540 and Psest_0541 are separated by 523 nucleotides Psest_0541 and Psest_0542 are separated by 220 nucleotides
Psest_0540: Psest_0540 - Ion transport protein., at 594,795 to 595,637
_0540
Psest_0541: Psest_0541 - succinate CoA transferases, at 596,161 to 597,672
_0541
Psest_0542: Psest_0542 - AMP nucleosidase, at 597,893 to 599,368
_0542
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.187 kb on - strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.645 kb on - strand at 595.697 kb on + strand at 595.720 kb on - strand at 595.929 kb on - strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.941 kb on + strand at 595.941 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.967 kb on - strand at 595.967 kb on - strand at 595.984 kb on + strand at 595.985 kb on - strand at 596.029 kb on + strand at 596.174 kb on + strand at 596.174 kb on + strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.482 kb on + strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.683 kb on + strand, within Psest_0541 at 596.684 kb on - strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.704 kb on + strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.705 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 596.753 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.158 kb on - strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.262 kb on + strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.263 kb on - strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.348 kb on + strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.349 kb on - strand, within Psest_0541 at 597.469 kb on + strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.470 kb on - strand, within Psest_0541 at 597.562 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.670 kb on + strand at 597.671 kb on - strand at 597.671 kb on - strand at 597.835 kb on + strand at 597.836 kb on - strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.837 kb on + strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.838 kb on - strand at 597.865 kb on - strand at 597.865 kb on - strand at 597.877 kb on + strand at 597.888 kb on + strand at 598.010 kb on + strand at 598.011 kb on - strand at 598.011 kb on - strand at 598.015 kb on - strand at 598.083 kb on - strand, within Psest_0542 at 598.083 kb on - strand, within Psest_0542 at 598.122 kb on - strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.148 kb on + strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.275 kb on - strand, within Psest_0542 at 598.375 kb on + strand, within Psest_0542 at 598.392 kb on - strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.475 kb on + strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.476 kb on - strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.500 kb on + strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.501 kb on - strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.526 kb on + strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542 at 598.527 kb on - strand, within Psest_0542
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 595,186 + Psest_0540 0.46 -0.5 595,186 + Psest_0540 0.46 -0.5 595,186 + Psest_0540 0.46 +0.1 595,186 + Psest_0540 0.46 -0.2 595,186 + Psest_0540 0.46 -1.9 595,186 + Psest_0540 0.46 -0.7 595,186 + Psest_0540 0.46 -0.5 595,187 - Psest_0540 0.47 +0.0 595,417 + Psest_0540 0.74 +0.9 595,417 + Psest_0540 0.74 -0.3 595,417 + Psest_0540 0.74 +1.5 595,417 + Psest_0540 0.74 +0.5 595,417 + Psest_0540 0.74 -1.0 595,417 + Psest_0540 0.74 -0.5 595,418 - Psest_0540 0.74 +0.9 595,418 - Psest_0540 0.74 +1.1 595,418 - Psest_0540 0.74 +0.0 595,418 - Psest_0540 0.74 +0.5 595,418 - Psest_0540 0.74 -0.5 595,418 - Psest_0540 0.74 +0.6 595,418 - Psest_0540 0.74 +0.2 595,418 - Psest_0540 0.74 +0.4 595,418 - Psest_0540 0.74 -0.0 595,418 - Psest_0540 0.74 +1.3 595,418 - Psest_0540 0.74 +0.8 595,644 + +1.0 595,644 + -0.6 595,644 + +0.1 595,644 + -0.7 595,644 + +2.1 595,645 - -0.3 595,697 + -1.0 595,720 - +1.1 595,929 - +3.2 595,931 + -1.0 595,931 + +3.7 595,931 + +0.5 595,932 - +3.3 595,932 - +1.2 595,932 - +2.9 595,932 - +3.8 595,939 + +0.3 595,939 + +1.7 595,939 + -0.5 595,939 + +0.1 595,939 + -0.9 595,939 + -0.5 595,939 + +2.3 595,939 + +0.8 595,939 + +1.1 595,940 - +2.9 595,940 - +4.1 595,940 - +3.9 595,940 - +2.3 595,940 - +3.0 595,940 - +4.2 595,940 - +2.9 595,940 - +3.8 595,940 - +4.2 595,940 - +3.7 595,940 - +3.8 595,940 - +3.1 595,940 - +3.5 595,941 + +0.5 595,941 + +2.1 595,966 + -1.7 595,966 + +0.3 595,966 + -0.9 595,966 + -0.5 595,967 - +4.1 595,967 - +4.0 595,984 + +0.6 595,985 - +3.3 596,029 + -0.2 596,174 + +3.3 596,174 + +3.6 596,175 - +3.2 596,175 - +2.8 596,175 - +3.1 596,175 - +3.3 596,175 - +2.0 596,182 + +3.6 596,182 + +0.5 596,182 + +3.4 596,182 + +3.9 596,182 + +3.0 596,182 + +3.1 596,182 + +2.5 596,182 + +3.0 596,182 + +3.0 596,182 + +2.7 596,182 + +2.0 596,183 - +2.9 596,183 - +2.1 596,183 - +3.4 596,183 - +3.1 596,183 - +4.6 596,183 - +2.9 596,183 - +1.5 596,183 - +4.2 596,183 - +2.9 596,482 + Psest_0541 0.21 +3.1 596,483 - Psest_0541 0.21 +3.0 596,483 - Psest_0541 0.21 +4.4 596,483 - Psest_0541 0.21 +5.8 596,483 - Psest_0541 0.21 -1.0 596,483 - Psest_0541 0.21 +2.8 596,483 - Psest_0541 0.21 +3.7 596,483 - Psest_0541 0.21 +2.4 596,483 - Psest_0541 0.21 +3.5 596,683 + Psest_0541 0.35 +2.6 596,684 - Psest_0541 0.35 +4.0 596,704 + Psest_0541 0.36 +2.1 596,704 + Psest_0541 0.36 +3.0 596,704 + Psest_0541 0.36 +3.7 596,704 + Psest_0541 0.36 +4.1 596,704 + Psest_0541 0.36 +3.9 596,704 + Psest_0541 0.36 +2.7 596,705 - Psest_0541 0.36 +3.9 596,705 - Psest_0541 0.36 +2.9 596,705 - Psest_0541 0.36 +3.3 596,705 - Psest_0541 0.36 +3.1 596,705 - Psest_0541 0.36 +2.3 596,705 - Psest_0541 0.36 +2.8 596,705 - Psest_0541 0.36 +3.0 596,705 - Psest_0541 0.36 +0.5 596,705 - Psest_0541 0.36 +2.5 596,705 - Psest_0541 0.36 +1.8 596,753 - Psest_0541 0.39 +2.4 596,753 - Psest_0541 0.39 +4.7 596,753 - Psest_0541 0.39 +2.6 597,158 - Psest_0541 0.66 +3.0 597,158 - Psest_0541 0.66 +2.9 597,158 - Psest_0541 0.66 +3.3 597,262 + Psest_0541 0.73 +3.2 597,262 + Psest_0541 0.73 +3.6 597,263 - Psest_0541 0.73 +3.0 597,263 - Psest_0541 0.73 +2.1 597,263 - Psest_0541 0.73 +3.0 597,348 + Psest_0541 0.79 +5.7 597,348 + Psest_0541 0.79 +3.3 597,348 + Psest_0541 0.79 +3.2 597,348 + Psest_0541 0.79 +2.2 597,349 - Psest_0541 0.79 +2.8 597,349 - Psest_0541 0.79 +3.9 597,349 - Psest_0541 0.79 +4.2 597,349 - Psest_0541 0.79 +2.9 597,469 + Psest_0541 0.87 +4.1 597,470 - Psest_0541 0.87 +2.9 597,470 - Psest_0541 0.87 +4.2 597,562 + +4.8 597,670 + +3.3 597,670 + +3.0 597,670 + +2.6 597,670 + +2.4 597,670 + +2.1 597,671 - +1.5 597,671 - +1.6 597,835 + +0.5 597,836 - +0.8 597,837 + -0.0 597,837 + -1.0 597,837 + -1.6 597,837 + -0.3 597,837 + +0.1 597,837 + +0.1 597,837 + -1.0 597,837 + +0.6 597,837 + -0.2 597,838 - +0.7 597,838 - +0.3 597,838 - +1.4 597,838 - -0.3 597,838 - +2.1 597,838 - +1.9 597,838 - +1.9 597,838 - +0.9 597,865 - +0.2 597,865 - +0.8 597,877 + -1.6 597,888 + -0.6 598,010 + -0.6 598,011 - +0.5 598,011 - +1.2 598,015 - +1.1 598,083 - Psest_0542 0.13 -1.0 598,083 - Psest_0542 0.13 +1.0 598,122 - Psest_0542 0.16 -0.4 598,148 + Psest_0542 0.17 -0.9 598,148 + Psest_0542 0.17 -0.5 598,275 - Psest_0542 0.26 +2.1 598,275 - Psest_0542 0.26 +0.9 598,275 - Psest_0542 0.26 +2.9 598,275 - Psest_0542 0.26 +1.4 598,375 + Psest_0542 0.33 -0.4 598,392 - Psest_0542 0.34 +1.7 598,475 + Psest_0542 0.39 -0.7 598,475 + Psest_0542 0.39 -0.5 598,475 + Psest_0542 0.39 +0.4 598,476 - Psest_0542 0.39 +3.5 598,476 - Psest_0542 0.39 +2.1 598,500 + Psest_0542 0.41 +1.1 598,500 + Psest_0542 0.41 +2.1 598,500 + Psest_0542 0.41 -1.0 598,501 - Psest_0542 0.41 +0.0 598,501 - Psest_0542 0.41 -0.7 598,526 + Psest_0542 0.43 -0.8 598,526 + Psest_0542 0.43 +0.2 598,527 - Psest_0542 0.43 +2.1 598,527 - Psest_0542 0.43 +1.4
Or see this region's nucleotide sequence