Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05460 and PGA1_c05470 are separated by 84 nucleotides PGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456
_c05470
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
Position (kb) 559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 558.101 kb on - strand at 558.123 kb on + strand at 558.257 kb on - strand, within PGA1_c05460 at 558.257 kb on - strand, within PGA1_c05460 at 558.273 kb on - strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.451 kb on - strand, within PGA1_c05460 at 558.520 kb on + strand, within PGA1_c05460 at 558.525 kb on - strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.595 kb on - strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460 at 558.892 kb on + strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.952 kb on + strand at 558.974 kb on + strand at 559.003 kb on - strand at 559.392 kb on + strand, within PGA1_c05470 at 559.392 kb on + strand, within PGA1_c05470 at 559.412 kb on + strand, within PGA1_c05470 at 559.489 kb on - strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.512 kb on + strand at 559.512 kb on + strand at 559.520 kb on - strand at 559.567 kb on - strand at 559.729 kb on + strand at 559.753 kb on + strand, within PGA1_c05480 at 559.775 kb on - strand, within PGA1_c05480 at 559.834 kb on - strand, within PGA1_c05480 at 559.874 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 560.012 kb on - strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.017 kb on - strand, within PGA1_c05480 at 560.022 kb on + strand, within PGA1_c05480 at 560.022 kb on - strand, within PGA1_c05480 at 560.077 kb on + strand, within PGA1_c05480 at 560.170 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.335 kb on - strand, within PGA1_c05480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 558,101 - -1.1 558,123 + +1.8 558,257 - PGA1_c05460 0.24 -0.4 558,257 - PGA1_c05460 0.24 +1.1 558,273 - PGA1_c05460 0.25 +1.0 558,320 + PGA1_c05460 0.30 +0.2 558,320 + PGA1_c05460 0.30 +0.4 558,451 - PGA1_c05460 0.44 -0.2 558,520 + PGA1_c05460 0.51 -2.0 558,525 - PGA1_c05460 0.51 +0.3 558,587 + PGA1_c05460 0.58 -2.6 558,587 + PGA1_c05460 0.58 -0.9 558,595 - PGA1_c05460 0.58 -1.4 558,597 + PGA1_c05460 0.59 +1.2 558,597 + PGA1_c05460 0.59 +0.4 558,605 - PGA1_c05460 0.59 +0.5 558,605 - PGA1_c05460 0.59 +0.5 558,641 + PGA1_c05460 0.63 -0.3 558,641 + PGA1_c05460 0.63 +0.2 558,651 + PGA1_c05460 0.64 -0.7 558,654 - PGA1_c05460 0.64 -1.0 558,659 - PGA1_c05460 0.65 -0.9 558,659 - PGA1_c05460 0.65 +1.0 558,674 - PGA1_c05460 0.66 -0.0 558,731 + PGA1_c05460 0.72 +0.6 558,892 + PGA1_c05460 0.89 +1.6 558,900 - PGA1_c05460 0.90 +2.0 558,900 - PGA1_c05460 0.90 +0.5 558,952 + +1.5 558,974 + -0.8 559,003 - +0.3 559,392 + PGA1_c05470 0.83 -1.4 559,392 + PGA1_c05470 0.83 +0.2 559,412 + PGA1_c05470 0.88 -1.4 559,489 - +2.2 559,505 + +2.0 559,505 + -0.2 559,505 + -0.6 559,512 + +1.4 559,512 + -1.2 559,520 - -0.7 559,567 - -0.3 559,729 + +0.5 559,753 + PGA1_c05480 0.10 +0.6 559,775 - PGA1_c05480 0.12 -0.3 559,834 - PGA1_c05480 0.16 -1.8 559,874 + PGA1_c05480 0.19 +0.7 559,933 + PGA1_c05480 0.23 -0.4 559,933 + PGA1_c05480 0.23 -0.6 560,012 - PGA1_c05480 0.28 +1.0 560,014 + PGA1_c05480 0.28 +1.3 560,014 + PGA1_c05480 0.28 +0.5 560,014 + PGA1_c05480 0.28 -0.7 560,017 - PGA1_c05480 0.29 +0.4 560,022 + PGA1_c05480 0.29 -0.6 560,022 - PGA1_c05480 0.29 -1.4 560,077 + PGA1_c05480 0.33 +0.3 560,170 + PGA1_c05480 0.39 -0.0 560,317 + PGA1_c05480 0.50 -0.2 560,317 + PGA1_c05480 0.50 -0.4 560,317 + PGA1_c05480 0.50 -1.5 560,317 + PGA1_c05480 0.50 -2.0 560,317 + PGA1_c05480 0.50 -2.2 560,317 + PGA1_c05480 0.50 -0.9 560,325 - PGA1_c05480 0.50 +1.5 560,325 - PGA1_c05480 0.50 +1.6 560,325 - PGA1_c05480 0.50 +1.3 560,327 + PGA1_c05480 0.51 +2.3 560,327 + PGA1_c05480 0.51 +0.5 560,327 + PGA1_c05480 0.51 -1.6 560,327 + PGA1_c05480 0.51 -1.6 560,327 + PGA1_c05480 0.51 -2.4 560,327 + PGA1_c05480 0.51 +0.4 560,335 - PGA1_c05480 0.51 +1.7
Or see this region's nucleotide sequence