Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04980 and PGA1_c04990 overlap by 11 nucleotides PGA1_c04990 and PGA1_c05000 are separated by 398 nucleotides
PGA1_c04980: PGA1_c04980 - putative transposase, at 489,081 to 489,872
_c04980
PGA1_c04990: PGA1_c04990 - transposase, at 489,862 to 491,391
_c04990
PGA1_c05000: PGA1_c05000 - Predicted membrane protein, at 491,790 to 494,612
_c05000
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 488.867 kb on - strand at 488.902 kb on - strand at 488.933 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand at 488.949 kb on - strand at 489.023 kb on - strand at 491.480 kb on + strand at 491.480 kb on + strand at 491.570 kb on - strand at 491.648 kb on - strand at 491.781 kb on + strand at 491.788 kb on + strand at 491.789 kb on - strand at 491.789 kb on - strand at 491.842 kb on + strand at 491.842 kb on + strand at 491.857 kb on + strand at 491.862 kb on + strand at 491.865 kb on - strand at 491.867 kb on + strand at 491.867 kb on + strand at 491.875 kb on - strand at 491.941 kb on - strand at 491.948 kb on + strand at 491.951 kb on - strand at 491.981 kb on + strand at 492.065 kb on + strand at 492.072 kb on + strand at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.166 kb on + strand, within PGA1_c05000 at 492.174 kb on - strand, within PGA1_c05000 at 492.174 kb on - strand, within PGA1_c05000 at 492.268 kb on + strand, within PGA1_c05000 at 492.276 kb on - strand, within PGA1_c05000 at 492.307 kb on + strand, within PGA1_c05000 at 492.307 kb on + strand, within PGA1_c05000 at 492.315 kb on - strand, within PGA1_c05000 at 492.315 kb on - strand, within PGA1_c05000 at 492.343 kb on + strand, within PGA1_c05000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 488,867 - -0.2 488,902 - -0.6 488,933 + -1.5 488,941 + -1.1 488,942 - -0.7 488,949 - -0.7 489,023 - +0.1 491,480 + +0.6 491,480 + +0.7 491,570 - -0.1 491,648 - -3.2 491,781 + -0.6 491,788 + -0.8 491,789 - -1.0 491,789 - +0.5 491,842 + -0.1 491,842 + -1.1 491,857 + -0.0 491,862 + +0.6 491,865 - -0.0 491,867 + -0.3 491,867 + -0.3 491,875 - +0.5 491,941 - +0.7 491,948 + -0.1 491,951 - -1.5 491,981 + -0.2 492,065 + +1.4 492,072 + +1.2 492,121 + PGA1_c05000 0.12 +0.6 492,121 + PGA1_c05000 0.12 +0.1 492,121 + PGA1_c05000 0.12 +0.4 492,121 + PGA1_c05000 0.12 -0.1 492,121 + PGA1_c05000 0.12 +0.2 492,129 - PGA1_c05000 0.12 +0.1 492,129 - PGA1_c05000 0.12 +0.2 492,129 - PGA1_c05000 0.12 -1.3 492,129 - PGA1_c05000 0.12 -1.0 492,129 - PGA1_c05000 0.12 -0.5 492,166 + PGA1_c05000 0.13 -2.2 492,174 - PGA1_c05000 0.14 -0.5 492,174 - PGA1_c05000 0.14 +0.5 492,268 + PGA1_c05000 0.17 -0.7 492,276 - PGA1_c05000 0.17 -0.1 492,307 + PGA1_c05000 0.18 -0.0 492,307 + PGA1_c05000 0.18 -1.3 492,315 - PGA1_c05000 0.19 -0.3 492,315 - PGA1_c05000 0.19 -1.2 492,343 + PGA1_c05000 0.20 -0.4
Or see this region's nucleotide sequence