Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04890 and PGA1_c04900 are separated by 77 nucleotides PGA1_c04900 and PGA1_c04910 are separated by 197 nucleotides PGA1_c04910 and PGA1_c04920 are separated by 124 nucleotides
PGA1_c04890: PGA1_c04890 - putative beta-lactamase, at 480,316 to 481,479
_c04890
PGA1_c04900: PGA1_c04900 - peptidyl-tRNA hydrolase Pth, at 481,557 to 482,315
_c04900
PGA1_c04910: PGA1_c04910 - 50S ribosomal protein L25, at 482,513 to 483,142
_c04910
PGA1_c04920: PGA1_c04920 - l-lactate dehydrogenase IldD, at 483,267 to 484,433
_c04920
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 480.558 kb on - strand, within PGA1_c04890 at 480.583 kb on - strand, within PGA1_c04890 at 480.593 kb on + strand, within PGA1_c04890 at 480.661 kb on + strand, within PGA1_c04890 at 480.666 kb on + strand, within PGA1_c04890 at 480.678 kb on + strand, within PGA1_c04890 at 480.681 kb on - strand, within PGA1_c04890 at 480.692 kb on + strand, within PGA1_c04890 at 480.696 kb on + strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.891 kb on + strand, within PGA1_c04890 at 480.898 kb on + strand, within PGA1_c04890 at 480.899 kb on - strand, within PGA1_c04890 at 480.906 kb on - strand, within PGA1_c04890 at 480.934 kb on + strand, within PGA1_c04890 at 480.970 kb on + strand, within PGA1_c04890 at 480.978 kb on - strand, within PGA1_c04890 at 480.978 kb on - strand, within PGA1_c04890 at 481.007 kb on + strand, within PGA1_c04890 at 481.079 kb on + strand, within PGA1_c04890 at 481.142 kb on + strand, within PGA1_c04890 at 481.199 kb on - strand, within PGA1_c04890 at 481.249 kb on + strand, within PGA1_c04890 at 481.249 kb on + strand, within PGA1_c04890 at 481.259 kb on + strand, within PGA1_c04890 at 481.274 kb on - strand, within PGA1_c04890 at 481.274 kb on - strand, within PGA1_c04890 at 481.284 kb on - strand, within PGA1_c04890 at 481.284 kb on - strand, within PGA1_c04890 at 481.363 kb on - strand at 481.376 kb on + strand at 481.404 kb on + strand at 481.411 kb on + strand at 481.411 kb on + strand at 481.419 kb on - strand at 481.424 kb on + strand at 481.479 kb on + strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.498 kb on + strand at 481.506 kb on - strand at 481.506 kb on - strand at 481.508 kb on - strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.588 kb on - strand at 481.611 kb on + strand at 481.614 kb on + strand at 481.614 kb on + strand at 481.619 kb on - strand at 481.619 kb on - strand at 481.622 kb on - strand at 481.629 kb on - strand at 481.629 kb on - strand at 481.666 kb on - strand, within PGA1_c04900 at 481.711 kb on - strand, within PGA1_c04900 at 481.750 kb on + strand, within PGA1_c04900 at 481.763 kb on + strand, within PGA1_c04900 at 482.327 kb on - strand at 482.327 kb on - strand at 482.327 kb on - strand at 482.329 kb on - strand at 482.341 kb on - strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on - strand at 482.358 kb on - strand at 482.366 kb on - strand at 482.366 kb on - strand at 482.399 kb on + strand at 482.419 kb on - strand at 482.421 kb on + strand at 482.435 kb on + strand at 482.435 kb on + strand at 482.443 kb on - strand at 483.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 480,558 - PGA1_c04890 0.21 -0.2 480,583 - PGA1_c04890 0.23 +0.2 480,593 + PGA1_c04890 0.24 -1.7 480,661 + PGA1_c04890 0.30 +1.1 480,666 + PGA1_c04890 0.30 -0.5 480,678 + PGA1_c04890 0.31 -0.4 480,681 - PGA1_c04890 0.31 -0.6 480,692 + PGA1_c04890 0.32 +0.3 480,696 + PGA1_c04890 0.33 +1.0 480,803 - PGA1_c04890 0.42 -0.0 480,803 - PGA1_c04890 0.42 -1.8 480,803 - PGA1_c04890 0.42 +0.8 480,803 - PGA1_c04890 0.42 +0.6 480,803 - PGA1_c04890 0.42 +0.4 480,803 - PGA1_c04890 0.42 -0.5 480,803 - PGA1_c04890 0.42 -1.4 480,803 - PGA1_c04890 0.42 -0.4 480,891 + PGA1_c04890 0.49 -2.4 480,898 + PGA1_c04890 0.50 -0.9 480,899 - PGA1_c04890 0.50 -0.4 480,906 - PGA1_c04890 0.51 +0.2 480,934 + PGA1_c04890 0.53 +0.5 480,970 + PGA1_c04890 0.56 +2.3 480,978 - PGA1_c04890 0.57 -1.0 480,978 - PGA1_c04890 0.57 -1.1 481,007 + PGA1_c04890 0.59 -2.4 481,079 + PGA1_c04890 0.66 -0.3 481,142 + PGA1_c04890 0.71 -0.8 481,199 - PGA1_c04890 0.76 +0.0 481,249 + PGA1_c04890 0.80 -0.4 481,249 + PGA1_c04890 0.80 -1.0 481,259 + PGA1_c04890 0.81 -1.4 481,274 - PGA1_c04890 0.82 -2.0 481,274 - PGA1_c04890 0.82 -2.0 481,284 - PGA1_c04890 0.83 +0.5 481,284 - PGA1_c04890 0.83 +1.3 481,363 - -1.1 481,376 + +0.2 481,404 + -2.7 481,411 + +1.2 481,411 + -0.4 481,419 - -0.8 481,424 + -0.0 481,479 + +0.6 481,497 - -0.9 481,497 - +0.4 481,497 - +0.1 481,497 - +0.4 481,498 + +0.1 481,506 - -2.2 481,506 - -1.0 481,508 - -0.2 481,514 + -0.7 481,514 + +0.8 481,514 + -1.8 481,514 + +0.8 481,514 + -0.0 481,514 + -0.7 481,522 - -0.5 481,522 - -0.6 481,522 - -2.5 481,522 - +0.6 481,522 - -1.8 481,522 - -1.3 481,522 - +0.2 481,522 - -0.1 481,588 - -0.1 481,611 + -0.8 481,614 + -0.9 481,614 + -0.5 481,619 - -1.7 481,619 - -0.7 481,622 - -0.6 481,629 - -1.8 481,629 - -0.0 481,666 - PGA1_c04900 0.14 -1.1 481,711 - PGA1_c04900 0.20 -1.1 481,750 + PGA1_c04900 0.25 +0.6 481,763 + PGA1_c04900 0.27 -1.5 482,327 - +0.7 482,327 - +0.5 482,327 - +0.1 482,329 - +0.9 482,341 - -0.0 482,350 + -0.8 482,350 + -0.3 482,350 + +1.0 482,350 + -0.4 482,358 + -0.7 482,358 + -1.0 482,358 + -1.4 482,358 - -0.9 482,358 - -1.6 482,366 - +0.3 482,366 - -0.5 482,399 + -0.7 482,419 - +0.6 482,421 + -0.3 482,435 + -0.0 482,435 + -3.0 482,443 - -0.9 483,252 - -0.0
Or see this region's nucleotide sequence