Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0418

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0417 and Psest_0418 are separated by 149 nucleotidesPsest_0418 and Psest_0419 are separated by 137 nucleotides Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633 _0417 Psest_0418: Psest_0418 - diguanylate cyclase (GGDEF) domain, at 453,783 to 455,072 _0418 Psest_0419: Psest_0419 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 455,210 to 456,988 _0419 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 452.920 kb on + strand, within Psest_0417at 453.071 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.074 kb on - strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.394 kb on + strand, within Psest_0417at 453.403 kb on + strand, within Psest_0417at 453.526 kb on + strandat 453.648 kb on - strandat 453.766 kb on - strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.917 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.991 kb on - strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.027 kb on - strand, within Psest_0418at 454.030 kb on - strand, within Psest_0418at 454.341 kb on + strand, within Psest_0418at 454.342 kb on - strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.498 kb on - strand, within Psest_0418at 454.582 kb on - strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.645 kb on + strand, within Psest_0418at 454.645 kb on + strand, within Psest_0418at 454.646 kb on - strand, within Psest_0418at 454.691 kb on - strand, within Psest_0418at 454.790 kb on - strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.963 kb on + strandat 454.963 kb on + strandat 454.964 kb on - strandat 454.964 kb on - strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.024 kb on - strandat 455.047 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.071 kb on - strandat 455.087 kb on - strandat 455.219 kb on + strandat 455.459 kb on + strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.627 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.779 kb on + strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.916 kb on + strand, within Psest_0419at 455.916 kb on + strand, within Psest_0419at 455.917 kb on - strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.005 kb on - strand, within Psest_0419at 456.005 kb on - strand, within Psest_0419

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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452,920 + Psest_0417 0.60 +3.5
453,071 + Psest_0417 0.69 +2.1
453,073 + Psest_0417 0.69 +1.6
453,073 + Psest_0417 0.69 +2.4
453,074 - Psest_0417 0.69 +3.1
453,145 + Psest_0417 0.73 +2.1
453,145 + Psest_0417 0.73 +1.4
453,394 + Psest_0417 0.87 +0.3
453,403 + Psest_0417 0.87 +1.1
453,526 + +2.9
453,648 - +0.3
453,766 - +1.2
453,897 + +1.8
453,897 + -0.3
453,897 + +0.5
453,897 + -0.0
453,897 + +0.1
453,898 - +0.8
453,898 - +0.4
453,898 - +0.9
453,898 - -0.1
453,917 - Psest_0418 0.10 -0.6
453,952 - Psest_0418 0.13 -0.4
453,952 - Psest_0418 0.13 +0.9
453,952 - Psest_0418 0.13 -2.4
453,952 - Psest_0418 0.13 +1.3
453,991 - Psest_0418 0.16 +0.9
453,999 + Psest_0418 0.17 +2.7
453,999 + Psest_0418 0.17 +2.6
453,999 + Psest_0418 0.17 +4.0
453,999 + Psest_0418 0.17 +1.8
454,026 + Psest_0418 0.19 +3.7
454,026 + Psest_0418 0.19 +3.4
454,026 + Psest_0418 0.19 +3.1
454,026 + Psest_0418 0.19 +2.6
454,026 + Psest_0418 0.19 +3.1
454,027 - Psest_0418 0.19 -0.5
454,030 - Psest_0418 0.19 +0.5
454,341 + Psest_0418 0.43 +2.9
454,342 - Psest_0418 0.43 -1.7
454,497 + Psest_0418 0.55 +5.4
454,497 + Psest_0418 0.55 +4.6
454,497 + Psest_0418 0.55 +5.8
454,497 + Psest_0418 0.55 +3.4
454,498 - Psest_0418 0.55 -0.1
454,582 - Psest_0418 0.62 +2.5
454,632 + Psest_0418 0.66 +8.0
454,632 + Psest_0418 0.66 +6.7
454,632 + Psest_0418 0.66 +6.9
454,632 + Psest_0418 0.66 +5.8
454,632 + Psest_0418 0.66 +7.0
454,632 + Psest_0418 0.66 +7.6
454,632 + Psest_0418 0.66 +8.0
454,632 + Psest_0418 0.66 +10.2
454,632 + Psest_0418 0.66 +7.1
454,632 + Psest_0418 0.66 +7.6
454,633 - Psest_0418 0.66 +0.1
454,633 - Psest_0418 0.66 -0.7
454,633 - Psest_0418 0.66 +0.7
454,633 - Psest_0418 0.66 -0.7
454,633 - Psest_0418 0.66 +0.9
454,633 - Psest_0418 0.66 +0.8
454,633 - Psest_0418 0.66 +2.3
454,633 - Psest_0418 0.66 +0.9
454,633 - Psest_0418 0.66 +0.6
454,633 - Psest_0418 0.66 +0.3
454,645 + Psest_0418 0.67 +7.7
454,645 + Psest_0418 0.67 +8.0
454,646 - Psest_0418 0.67 +0.6
454,691 - Psest_0418 0.70 -0.7
454,790 - Psest_0418 0.78 +0.1
454,809 + Psest_0418 0.80 +7.1
454,809 + Psest_0418 0.80 +7.4
454,809 + Psest_0418 0.80 +6.9
454,810 - Psest_0418 0.80 +1.4
454,810 - Psest_0418 0.80 +2.4
454,810 - Psest_0418 0.80 +1.3
454,810 - Psest_0418 0.80 +0.3
454,810 - Psest_0418 0.80 -0.9
454,810 - Psest_0418 0.80 +0.7
454,810 - Psest_0418 0.80 -1.0
454,810 - Psest_0418 0.80 +0.7
454,810 - Psest_0418 0.80 +0.1
454,810 - Psest_0418 0.80 +0.3
454,963 + +7.6
454,963 + +5.8
454,964 - +0.4
454,964 - -1.2
455,023 + +7.2
455,023 + +6.1
455,023 + +2.5
455,023 + +7.0
455,023 + +7.8
455,024 - +1.6
455,047 + +7.7
455,051 + +5.9
455,051 + +7.8
455,051 + +6.6
455,051 + +7.4
455,051 + +9.3
455,051 + +8.2
455,052 - +0.5
455,052 - +2.1
455,052 - +1.2
455,052 - +1.6
455,052 - -0.3
455,052 - +0.6
455,052 - -0.9
455,052 - +0.9
455,071 - +1.4
455,087 - +2.2
455,219 + -1.0
455,459 + Psest_0419 0.14 -4.0
455,460 - Psest_0419 0.14 -2.4
455,460 - Psest_0419 0.14 +1.1
455,460 - Psest_0419 0.14 -4.5
455,468 + Psest_0419 0.15 -2.1
455,468 + Psest_0419 0.15 -2.9
455,468 + Psest_0419 0.15 -2.3
455,468 + Psest_0419 0.15 -3.5
455,468 + Psest_0419 0.15 -1.9
455,469 - Psest_0419 0.15 -1.2
455,469 - Psest_0419 0.15 -3.4
455,469 - Psest_0419 0.15 -3.5
455,469 - Psest_0419 0.15 -4.4
455,469 - Psest_0419 0.15 -3.3
455,627 + Psest_0419 0.23 -2.3
455,660 + Psest_0419 0.25 -3.6
455,660 + Psest_0419 0.25 -2.2
455,660 + Psest_0419 0.25 -1.0
455,660 + Psest_0419 0.25 -3.7
455,660 + Psest_0419 0.25 +4.5
455,660 + Psest_0419 0.25 -1.4
455,660 + Psest_0419 0.25 -0.2
455,661 - Psest_0419 0.25 -2.2
455,661 - Psest_0419 0.25 -3.8
455,661 - Psest_0419 0.25 -1.0
455,661 - Psest_0419 0.25 -3.1
455,661 - Psest_0419 0.25 -0.9
455,661 - Psest_0419 0.25 -2.3
455,661 - Psest_0419 0.25 -3.0
455,661 - Psest_0419 0.25 -2.6
455,661 - Psest_0419 0.25 -3.8
455,661 - Psest_0419 0.25 -3.6
455,661 - Psest_0419 0.25 -2.0
455,661 - Psest_0419 0.25 -3.1
455,675 + Psest_0419 0.26 -3.1
455,675 + Psest_0419 0.26 -2.9
455,675 + Psest_0419 0.26 -2.2
455,675 + Psest_0419 0.26 -1.2
455,675 + Psest_0419 0.26 -2.6
455,675 + Psest_0419 0.26 -2.8
455,675 + Psest_0419 0.26 -1.3
455,675 + Psest_0419 0.26 -2.6
455,675 + Psest_0419 0.26 -2.6
455,675 + Psest_0419 0.26 -1.4
455,675 + Psest_0419 0.26 -1.5
455,675 + Psest_0419 0.26 -3.6
455,675 + Psest_0419 0.26 -4.4
455,675 + Psest_0419 0.26 +0.6
455,675 + Psest_0419 0.26 -2.0
455,675 + Psest_0419 0.26 -2.0
455,676 - Psest_0419 0.26 -1.8
455,676 - Psest_0419 0.26 -2.3
455,676 - Psest_0419 0.26 -1.9
455,676 - Psest_0419 0.26 -3.6
455,676 - Psest_0419 0.26 -3.2
455,676 - Psest_0419 0.26 -1.1
455,676 - Psest_0419 0.26 -0.4
455,676 - Psest_0419 0.26 -1.0
455,676 - Psest_0419 0.26 -3.6
455,676 - Psest_0419 0.26 -2.9
455,676 - Psest_0419 0.26 -0.4
455,676 - Psest_0419 0.26 -2.4
455,676 - Psest_0419 0.26 -1.7
455,777 + Psest_0419 0.32 -3.9
455,777 + Psest_0419 0.32 -0.7
455,777 + Psest_0419 0.32 -0.9
455,777 + Psest_0419 0.32 -4.0
455,777 + Psest_0419 0.32 -4.0
455,777 + Psest_0419 0.32 -3.3
455,777 + Psest_0419 0.32 -0.4
455,777 + Psest_0419 0.32 -2.2
455,777 + Psest_0419 0.32 -2.8
455,777 + Psest_0419 0.32 -1.2
455,777 + Psest_0419 0.32 -1.7
455,777 + Psest_0419 0.32 -0.4
455,777 + Psest_0419 0.32 -1.4
455,777 + Psest_0419 0.32 -0.6
455,777 + Psest_0419 0.32 -1.2
455,777 + Psest_0419 0.32 -2.4
455,777 + Psest_0419 0.32 -1.9
455,777 + Psest_0419 0.32 -4.2
455,778 - Psest_0419 0.32 -3.3
455,778 - Psest_0419 0.32 -2.1
455,778 - Psest_0419 0.32 -1.0
455,778 - Psest_0419 0.32 -2.4
455,778 - Psest_0419 0.32 -1.2
455,778 - Psest_0419 0.32 -3.2
455,778 - Psest_0419 0.32 -1.4
455,778 - Psest_0419 0.32 -4.6
455,778 - Psest_0419 0.32 -2.9
455,778 - Psest_0419 0.32 -3.2
455,779 + Psest_0419 0.32 -3.4
455,780 - Psest_0419 0.32 -2.4
455,780 - Psest_0419 0.32 -2.8
455,780 - Psest_0419 0.32 -1.6
455,780 - Psest_0419 0.32 -2.6
455,916 + Psest_0419 0.40 -3.2
455,916 + Psest_0419 0.40 -0.7
455,917 - Psest_0419 0.40 -2.3
456,004 + Psest_0419 0.45 -2.1
456,004 + Psest_0419 0.45 -2.6
456,004 + Psest_0419 0.45 -4.0
456,005 - Psest_0419 0.45 -2.8
456,005 - Psest_0419 0.45 -2.5

Or see this region's nucleotide sequence