Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4236 and Psest_4237 are separated by 147 nucleotides Psest_4237 and Psest_4238 are separated by 301 nucleotides Psest_4238 and Psest_4239 are separated by 37 nucleotides
Psest_4236: Psest_4236 - Predicted signal transduction protein, at 4,419,599 to 4,420,807
_4236
Psest_4237: Psest_4237 - succinate-semialdehyde dehydrogenase, at 4,420,955 to 4,422,403
_4237
Psest_4238: Psest_4238 - Cytochrome c556, at 4,422,705 to 4,423,169
_4238
Psest_4239: Psest_4239 - Cytochrome b, at 4,423,207 to 4,423,902
_4239
Position (kb) 4420
4421
4422
4423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4420.313 kb on + strand, within Psest_4236 at 4420.314 kb on - strand, within Psest_4236 at 4420.467 kb on + strand, within Psest_4236 at 4420.467 kb on + strand, within Psest_4236 at 4420.767 kb on + strand at 4420.767 kb on + strand at 4420.768 kb on - strand at 4420.974 kb on + strand at 4420.974 kb on + strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.990 kb on - strand at 4421.004 kb on + strand at 4421.005 kb on - strand at 4421.005 kb on - strand at 4421.005 kb on - strand at 4421.101 kb on - strand, within Psest_4237 at 4421.149 kb on - strand, within Psest_4237 at 4421.149 kb on - strand, within Psest_4237 at 4421.154 kb on + strand, within Psest_4237 at 4421.154 kb on + strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.304 kb on + strand, within Psest_4237 at 4421.304 kb on + strand, within Psest_4237 at 4421.305 kb on - strand, within Psest_4237 at 4421.305 kb on - strand, within Psest_4237 at 4421.375 kb on - strand, within Psest_4237 at 4421.375 kb on - strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.500 kb on - strand, within Psest_4237 at 4421.500 kb on - strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.560 kb on - strand, within Psest_4237 at 4421.560 kb on - strand, within Psest_4237 at 4421.726 kb on + strand, within Psest_4237 at 4421.727 kb on - strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.025 kb on - strand, within Psest_4237 at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.425 kb on - strand at 4422.527 kb on + strand at 4422.527 kb on + strand at 4422.528 kb on - strand at 4422.528 kb on - strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.635 kb on + strand at 4422.648 kb on - strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.945 kb on + strand, within Psest_4238
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,420,313 + Psest_4236 0.59 -2.1 4,420,314 - Psest_4236 0.59 +0.1 4,420,467 + Psest_4236 0.72 +0.9 4,420,467 + Psest_4236 0.72 +0.1 4,420,767 + +0.4 4,420,767 + -0.5 4,420,768 - +1.9 4,420,974 + -0.4 4,420,974 + -0.8 4,420,975 - +0.9 4,420,975 - +0.5 4,420,975 - +1.4 4,420,975 - +0.6 4,420,990 - -0.4 4,421,004 + +2.8 4,421,005 - -0.4 4,421,005 - -0.4 4,421,005 - +0.4 4,421,101 - Psest_4237 0.10 +0.4 4,421,149 - Psest_4237 0.13 +1.4 4,421,149 - Psest_4237 0.13 -0.6 4,421,154 + Psest_4237 0.14 +0.4 4,421,154 + Psest_4237 0.14 -0.9 4,421,155 - Psest_4237 0.14 -0.2 4,421,155 - Psest_4237 0.14 -1.4 4,421,155 - Psest_4237 0.14 +0.4 4,421,155 - Psest_4237 0.14 -0.6 4,421,304 + Psest_4237 0.24 -0.6 4,421,304 + Psest_4237 0.24 -1.0 4,421,305 - Psest_4237 0.24 -0.5 4,421,305 - Psest_4237 0.24 +0.1 4,421,375 - Psest_4237 0.29 +0.9 4,421,375 - Psest_4237 0.29 -0.1 4,421,499 + Psest_4237 0.38 -0.5 4,421,499 + Psest_4237 0.38 +1.9 4,421,499 + Psest_4237 0.38 +0.4 4,421,499 + Psest_4237 0.38 +0.4 4,421,500 - Psest_4237 0.38 +0.9 4,421,500 - Psest_4237 0.38 +1.9 4,421,517 + Psest_4237 0.39 +0.0 4,421,517 + Psest_4237 0.39 +0.4 4,421,517 + Psest_4237 0.39 +0.6 4,421,517 + Psest_4237 0.39 -1.0 4,421,517 + Psest_4237 0.39 +0.3 4,421,517 + Psest_4237 0.39 -0.1 4,421,517 + Psest_4237 0.39 +0.9 4,421,517 + Psest_4237 0.39 -0.1 4,421,517 + Psest_4237 0.39 +0.4 4,421,517 + Psest_4237 0.39 +0.9 4,421,517 + Psest_4237 0.39 +1.2 4,421,517 + Psest_4237 0.39 +0.6 4,421,517 + Psest_4237 0.39 -0.6 4,421,517 + Psest_4237 0.39 -0.1 4,421,517 + Psest_4237 0.39 +0.5 4,421,517 + Psest_4237 0.39 -1.9 4,421,517 + Psest_4237 0.39 +1.3 4,421,517 + Psest_4237 0.39 +1.4 4,421,517 + Psest_4237 0.39 -1.1 4,421,517 + Psest_4237 0.39 -0.1 4,421,518 - Psest_4237 0.39 -0.5 4,421,518 - Psest_4237 0.39 -0.1 4,421,518 - Psest_4237 0.39 +1.9 4,421,518 - Psest_4237 0.39 +1.9 4,421,518 - Psest_4237 0.39 -0.5 4,421,518 - Psest_4237 0.39 -0.1 4,421,518 - Psest_4237 0.39 -0.1 4,421,518 - Psest_4237 0.39 +1.2 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 -0.9 4,421,518 - Psest_4237 0.39 +3.5 4,421,518 - Psest_4237 0.39 +0.5 4,421,518 - Psest_4237 0.39 +0.9 4,421,518 - Psest_4237 0.39 +0.7 4,421,518 - Psest_4237 0.39 +0.4 4,421,518 - Psest_4237 0.39 +1.3 4,421,518 - Psest_4237 0.39 +1.1 4,421,518 - Psest_4237 0.39 +1.1 4,421,518 - Psest_4237 0.39 +0.9 4,421,560 - Psest_4237 0.42 +1.4 4,421,560 - Psest_4237 0.42 +1.5 4,421,726 + Psest_4237 0.53 +1.2 4,421,727 - Psest_4237 0.53 +0.9 4,422,024 + Psest_4237 0.74 +0.1 4,422,024 + Psest_4237 0.74 +0.9 4,422,024 + Psest_4237 0.74 +1.9 4,422,024 + Psest_4237 0.74 -0.4 4,422,025 - Psest_4237 0.74 +0.7 4,422,363 + +0.9 4,422,363 + +1.9 4,422,363 + -0.1 4,422,363 + -0.6 4,422,363 + -0.1 4,422,363 + +1.9 4,422,363 + +0.5 4,422,364 - +0.8 4,422,364 - +1.5 4,422,364 - +1.2 4,422,364 - -1.1 4,422,364 - +0.7 4,422,364 - +0.0 4,422,364 - +0.9 4,422,425 - +0.4 4,422,527 + -3.2 4,422,527 + +0.9 4,422,528 - -0.6 4,422,528 - +0.7 4,422,594 + +1.6 4,422,594 + +0.1 4,422,594 + -0.4 4,422,594 + +0.9 4,422,594 + +0.9 4,422,594 + -0.6 4,422,595 - -0.6 4,422,595 - -0.3 4,422,595 - +1.2 4,422,595 - +0.4 4,422,595 - +1.9 4,422,595 - +0.4 4,422,595 - -0.8 4,422,595 - +0.6 4,422,635 + +0.5 4,422,648 - +0.9 4,422,649 + +1.4 4,422,649 + +0.4 4,422,649 + +1.4 4,422,649 + +0.9 4,422,649 + +1.4 4,422,649 + +0.6 4,422,649 + -0.1 4,422,649 + +1.9 4,422,649 + +1.2 4,422,649 + +1.3 4,422,649 + +1.6 4,422,650 - -0.4 4,422,650 - +0.0 4,422,650 - -0.1 4,422,650 - -0.6 4,422,650 - -0.9 4,422,650 - -0.9 4,422,650 - -0.2 4,422,650 - -0.9 4,422,650 - -0.2 4,422,945 + Psest_4238 0.52 -0.1
Or see this region's nucleotide sequence