Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4018

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
4,194,494	+		Psest_4017	0.35	-0.6
4,194,494	+		Psest_4017	0.35	-0.2
4,194,494	+		Psest_4017	0.35	-1.4
4,194,494	+		Psest_4017	0.35	-0.6
4,194,494	+		Psest_4017	0.35	-0.7
4,194,495	-		Psest_4017	0.35	-0.9
4,194,495	-		Psest_4017	0.35	-0.8
4,194,495	-		Psest_4017	0.35	-1.0
4,194,495	-		Psest_4017	0.35	+0.3
4,194,495	-		Psest_4017	0.35	+0.3
4,194,495	-		Psest_4017	0.35	-2.6
4,194,495	-		Psest_4017	0.35	-0.3
4,194,495	-		Psest_4017	0.35	-0.0
4,194,495	-		Psest_4017	0.35	-1.5
4,194,495	-		Psest_4017	0.35	-0.3
4,194,495	-		Psest_4017	0.35	-0.5
4,194,495	-		Psest_4017	0.35	-0.7
4,194,515	-		Psest_4017	0.38	-1.5
4,194,515	-		Psest_4017	0.38	-0.3
4,194,515	-		Psest_4017	0.38	-1.8
4,194,515	-		Psest_4017	0.38	-0.2
4,194,593	+		Psest_4017	0.48	-1.6
4,194,593	+		Psest_4017	0.48	-0.7
4,194,594	-		Psest_4017	0.49	-1.4
4,194,594	-		Psest_4017	0.49	-0.7
4,194,632	+		Psest_4017	0.54	-1.6
4,194,633	-		Psest_4017	0.54	-1.8
4,194,633	-		Psest_4017	0.54	+1.4
4,194,633	-		Psest_4017	0.54	-0.6
4,194,633	-		Psest_4017	0.54	-1.0
4,194,633	-		Psest_4017	0.54	-1.1
4,194,674	-		Psest_4017	0.59	+0.8
4,194,675	+		Psest_4017	0.59	-1.3
4,194,675	+		Psest_4017	0.59	-0.1
4,194,675	+		Psest_4017	0.59	+0.2
4,194,675	+		Psest_4017	0.59	-1.8
4,194,676	-		Psest_4017	0.59	-1.6
4,194,676	-		Psest_4017	0.59	-0.7
4,194,676	-		Psest_4017	0.59	-0.0
4,194,685	+		Psest_4017	0.61	+0.1
4,194,750	+		Psest_4017	0.69	-0.3
4,194,751	-		Psest_4017	0.69	-3.6
4,194,751	-		Psest_4017	0.69	-0.6
4,194,751	-		Psest_4017	0.69	+4.3
4,194,751	-		Psest_4017	0.69	-1.6
4,194,784	+		Psest_4017	0.74	-1.1
4,194,784	+		Psest_4017	0.74	+0.5
4,194,784	+		Psest_4017	0.74	-2.5
4,194,784	+		Psest_4017	0.74	-2.6
4,194,784	+		Psest_4017	0.74	-1.4
4,194,784	+		Psest_4017	0.74	-1.1
4,194,785	-		Psest_4017	0.74	-0.0
4,194,785	-		Psest_4017	0.74	-1.3
4,194,785	-		Psest_4017	0.74	-0.2
4,194,785	-		Psest_4017	0.74	-0.4
4,194,785	-		Psest_4017	0.74	-2.8
4,194,787	+		Psest_4017	0.74	-0.9
4,194,787	+		Psest_4017	0.74	-0.8
4,194,787	+		Psest_4017	0.74	+0.3
4,194,787	+		Psest_4017	0.74	-0.4
4,194,787	+		Psest_4017	0.74	-0.4
4,194,787	+		Psest_4017	0.74	-3.0
4,194,787	+		Psest_4017	0.74	-0.3
4,194,787	+		Psest_4017	0.74	+0.5
4,194,787	+		Psest_4017	0.74	+0.4
4,194,787	+		Psest_4017	0.74	-0.8
4,194,788	-		Psest_4017	0.74	+0.4
4,194,788	-		Psest_4017	0.74	-0.9
4,194,788	-		Psest_4017	0.74	-0.7
4,194,788	-		Psest_4017	0.74	-1.7
4,194,788	-		Psest_4017	0.74	-0.8
4,194,788	-		Psest_4017	0.74	-1.0
4,194,788	-		Psest_4017	0.74	+0.9
4,194,788	-		Psest_4017	0.74	+1.0
4,194,889	+		Psest_4017	0.88	+1.4
4,194,889	+		Psest_4017	0.88	-1.5
4,194,889	+		Psest_4017	0.88	+0.3
4,194,889	+		Psest_4017	0.88	-1.2
4,194,890	-		Psest_4017	0.88	-1.0
4,194,890	-		Psest_4017	0.88	-0.9
4,194,890	-		Psest_4017	0.88	-2.6
4,194,890	-		Psest_4017	0.88	-1.4
4,194,890	-		Psest_4017	0.88	+1.0
4,194,890	-		Psest_4017	0.88	-1.1
4,194,890	-		Psest_4017	0.88	-0.3
4,194,893	+		Psest_4017	0.88	-0.6
4,194,893	+		Psest_4017	0.88	+0.4
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	+0.0
4,194,893	+		Psest_4017	0.88	+0.0
4,194,893	+		Psest_4017	0.88	-0.0
4,194,893	+		Psest_4017	0.88	-0.3
4,194,893	+		Psest_4017	0.88	+0.1
4,194,893	+		Psest_4017	0.88	-0.2
4,194,893	+		Psest_4017	0.88	-1.3
4,194,893	+		Psest_4017	0.88	-0.3
4,194,893	+		Psest_4017	0.88	-0.6
4,194,893	+		Psest_4017	0.88	-2.7
4,194,893	+		Psest_4017	0.88	-2.2
4,194,893	+		Psest_4017	0.88	-0.0
4,194,893	+		Psest_4017	0.88	-0.0
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	-1.3
4,194,893	+		Psest_4017	0.88	-1.5
4,194,893	+		Psest_4017	0.88	-0.4
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.8
4,194,893	+		Psest_4017	0.88	-1.1
4,194,893	+		Psest_4017	0.88	-1.7
4,194,893	+		Psest_4017	0.88	+0.1
4,194,893	+		Psest_4017	0.88	-0.8
4,194,893	+		Psest_4017	0.88	-2.3
4,194,893	+		Psest_4017	0.88	+1.8
4,194,893	+		Psest_4017	0.88	-1.7
4,194,893	+		Psest_4017	0.88	-2.3
4,194,893	+		Psest_4017	0.88	-0.2
4,194,893	+		Psest_4017	0.88	-0.4
4,194,893	+		Psest_4017	0.88	-0.2
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.8
4,194,893	+		Psest_4017	0.88	-0.1
4,194,893	+		Psest_4017	0.88	-2.9
4,194,893	+		Psest_4017	0.88	-1.2
4,194,893	+		Psest_4017	0.88	+0.4
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	+2.0
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	+0.4
4,194,893	+		Psest_4017	0.88	-0.9
4,194,894	-		Psest_4017	0.89	-0.7
4,194,894	-		Psest_4017	0.89	-0.5
4,194,894	-		Psest_4017	0.89	+0.1
4,194,894	-		Psest_4017	0.89	-0.4
4,194,894	-		Psest_4017	0.89	-0.6
4,194,894	-		Psest_4017	0.89	-0.2
4,194,894	-		Psest_4017	0.89	-1.5
4,194,894	-		Psest_4017	0.89	-0.0
4,194,894	-		Psest_4017	0.89	+1.3
4,194,894	-		Psest_4017	0.89	-1.8
4,194,894	-		Psest_4017	0.89	-0.2
4,194,894	-		Psest_4017	0.89	-2.7
4,194,894	-		Psest_4017	0.89	-1.2
4,194,894	-		Psest_4017	0.89	-1.0
4,194,894	-		Psest_4017	0.89	-1.8
4,194,894	-		Psest_4017	0.89	-0.8
4,194,894	-		Psest_4017	0.89	-0.1
4,194,894	-		Psest_4017	0.89	-0.4
4,194,894	-		Psest_4017	0.89	+1.4
4,194,894	-		Psest_4017	0.89	-2.1
4,194,894	-		Psest_4017	0.89	+1.5
4,194,894	-		Psest_4017	0.89	-1.0
4,194,894	-		Psest_4017	0.89	-0.7
4,194,894	-		Psest_4017	0.89	-0.8
4,194,894	-		Psest_4017	0.89	-3.0
4,194,894	-		Psest_4017	0.89	-0.1
4,194,894	-		Psest_4017	0.89	-0.3
4,194,894	-		Psest_4017	0.89	+0.5
4,194,894	-		Psest_4017	0.89	-0.0
4,194,894	-		Psest_4017	0.89	+0.4
4,194,894	-		Psest_4017	0.89	-0.0
4,194,894	-		Psest_4017	0.89	-1.3
4,194,894	-		Psest_4017	0.89	-0.4
4,194,894	-		Psest_4017	0.89	+1.1
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	-0.7
4,194,894	-		Psest_4017	0.89	-1.7
4,194,894	-		Psest_4017	0.89	-1.2
4,194,894	-		Psest_4017	0.89	-0.9
4,194,950	+				-1.7
4,194,951	-				-1.0
4,194,951	-				+0.7
4,194,951	-				+0.2
4,194,951	-				+1.1
4,194,977	+				+0.7
4,194,977	+				+0.4
4,194,977	+				+0.7
4,194,977	+				-0.5
4,194,978	-				-0.9
4,194,978	-				-1.6
4,195,013	-				+0.9
4,195,082	+				+0.7
4,195,083	-				-2.7
4,195,083	-				+0.5
4,195,083	-				-0.7
4,195,091	+				+0.2
4,195,092	-				+0.5
4,195,157	-				+0.6
4,195,296	-				-1.8
4,195,400	+				-0.8
4,195,401	-				+0.1
4,195,401	-				-0.0
4,195,406	+				-0.8
4,195,407	-				-1.4
4,195,407	-				-1.5
4,195,407	-				-0.1
4,195,707	+		Psest_4018	0.38	-1.4
4,195,708	-		Psest_4018	0.38	-0.7
4,195,784	+		Psest_4018	0.48	-1.3
4,195,784	+		Psest_4018	0.48	-0.3
4,195,784	+		Psest_4018	0.48	+1.2
4,195,785	-		Psest_4018	0.48	+0.2
4,195,839	+		Psest_4018	0.55	-2.0
4,195,839	+		Psest_4018	0.55	-0.3
4,195,839	+		Psest_4018	0.55	-1.1
4,195,839	+		Psest_4018	0.55	-0.8
4,195,840	-		Psest_4018	0.55	-1.2
4,195,840	-		Psest_4018	0.55	+0.2
4,195,840	-		Psest_4018	0.55	+0.5
4,195,840	-		Psest_4018	0.55	-0.3
4,195,840	-		Psest_4018	0.55	-2.4
4,195,840	-		Psest_4018	0.55	-0.8
4,195,840	-		Psest_4018	0.55	+0.7
4,195,905	+		Psest_4018	0.64	-1.2
4,195,906	-		Psest_4018	0.64	-1.1
4,195,906	-		Psest_4018	0.64	-1.7
4,195,906	-		Psest_4018	0.64	-0.8
4,195,906	-		Psest_4018	0.64	-1.3
4,196,043	+		Psest_4018	0.82	-0.1
4,196,043	+		Psest_4018	0.82	-1.0
4,196,043	+		Psest_4018	0.82	-0.4
4,196,043	+		Psest_4018	0.82	+0.5
4,196,043	+		Psest_4018	0.82	-2.8
4,196,043	+		Psest_4018	0.82	+2.0
4,196,043	+		Psest_4018	0.82	+0.9
4,196,043	+		Psest_4018	0.82	-2.0
4,196,043	+		Psest_4018	0.82	+0.6
4,196,043	+		Psest_4018	0.82	-0.1
4,196,043	+		Psest_4018	0.82	+0.4
4,196,043	+		Psest_4018	0.82	-0.8
4,196,043	+		Psest_4018	0.82	-2.5
4,196,043	+		Psest_4018	0.82	-1.0
4,196,043	+		Psest_4018	0.82	+0.2
4,196,043	+		Psest_4018	0.82	+0.1
4,196,044	-		Psest_4018	0.82	-0.7
4,196,044	-		Psest_4018	0.82	+0.7
4,196,044	-		Psest_4018	0.82	-0.8
4,196,044	-		Psest_4018	0.82	-1.3
4,196,044	-		Psest_4018	0.82	-0.3
4,196,044	-		Psest_4018	0.82	-0.5
4,196,044	-		Psest_4018	0.82	-0.3
4,196,044	-		Psest_4018	0.82	-0.3
4,196,044	-		Psest_4018	0.82	-1.3
4,196,044	-		Psest_4018	0.82	+0.3
4,196,044	-		Psest_4018	0.82	+1.4
4,196,044	-		Psest_4018	0.82	-1.7
4,196,054	+		Psest_4018	0.83	-0.1
4,196,054	+		Psest_4018	0.83	-0.9
4,196,055	-		Psest_4018	0.83	-0.8
4,196,055	-		Psest_4018	0.83	-1.8
4,196,181	+				+0.7
4,196,224	+				-0.0
4,196,245	+				-1.7
4,196,246	-				-0.8
4,196,246	-				-1.3
4,196,267	-				+1.0
4,196,332	-				-0.6
4,196,336	+				-0.6
4,196,337	-				+1.4
4,196,338	+				-0.4
4,196,338	+				-2.7
4,196,338	+				+0.8
4,196,338	+				+2.7
4,196,338	+				-0.1
4,196,339	-				-1.5
4,196,339	-				-1.9
4,196,342	+				-0.9
4,196,342	+				-1.0
4,196,347	+				-2.1
4,196,347	+				-3.2
4,196,417	+				+0.8
4,196,417	+				-1.5
4,196,424	-				-0.3
4,196,424	-				-0.4
4,196,424	-				-0.2
4,196,424	-				-0.3
4,196,424	-				-0.8
4,196,424	-				-0.7
4,196,454	-				+1.9
4,196,664	+				-0.6
4,196,677	+				-1.0
4,196,695	+				-1.3
4,196,696	-				-0.1
4,196,702	+				-0.4
4,196,742	+				-0.9
4,196,742	+				-0.8
4,196,743	-				-1.3
4,196,743	-				+0.3
4,196,825	+				-1.0
4,196,825	+				+0.0
4,196,828	+				-0.5
4,196,828	+				-0.1
4,196,828	+				-0.1
4,196,828	+				-0.0
4,196,828	+				-0.9
4,196,828	+				-2.2
4,196,828	+				-1.2
4,196,829	-				-0.5
4,196,829	-				-2.4
4,196,829	-				-1.2
4,196,829	-				-2.5
4,196,829	-				+0.0
4,196,829	-				-3.3
4,196,829	-				-1.3
4,196,841	+				+2.6
4,196,841	+				-0.6
4,196,842	-				-1.2
4,196,842	-				-0.8
4,196,842	-				-0.0
4,196,842	-				-0.6
4,196,842	-				+0.3
4,196,877	+		Psest_4020	0.12	+0.4
4,196,877	+		Psest_4020	0.12	+0.2
4,196,877	+		Psest_4020	0.12	-0.3
4,196,877	+		Psest_4020	0.12	-0.9
4,196,877	+		Psest_4020	0.12	+0.6
4,196,878	-		Psest_4020	0.13	+0.2
4,196,878	-		Psest_4020	0.13	-0.2
4,196,878	-		Psest_4020	0.13	-0.3
4,196,878	-		Psest_4020	0.13	-0.2
4,196,878	-		Psest_4020	0.13	-1.1
4,196,878	-		Psest_4020	0.13	-0.5
4,196,911	+		Psest_4020	0.32	-1.9
4,196,912	-		Psest_4020	0.32	-1.2
4,196,912	-		Psest_4020	0.32	-1.0
4,196,912	-		Psest_4020	0.32	-1.5
4,196,912	-		Psest_4020	0.32	-1.8
4,196,912	-		Psest_4020	0.32	+0.6
4,196,912	-		Psest_4020	0.32	-1.5
4,196,912	-		Psest_4020	0.32	-1.0
4,196,915	+		Psest_4020	0.34	-0.1
4,196,916	-		Psest_4020	0.34	+1.0
4,196,916	-		Psest_4020	0.34	+0.0
4,197,065	-				-0.5
4,197,087	+				-0.4
4,197,179	-		Psest_4021	0.33	+1.0
4,197,179	-		Psest_4021	0.33	+0.4