Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00260 and PGA1_65p00270 are separated by 68 nucleotides PGA1_65p00270 and PGA1_65p00280 are separated by 267 nucleotides
PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026
_65p00260
PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314
_65p00270
PGA1_65p00280: PGA1_65p00280 - Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476)., at 36,582 to 37,838
_65p00280
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.104 kb on + strand, within PGA1_65p00260 at 33.112 kb on - strand, within PGA1_65p00260 at 33.154 kb on + strand, within PGA1_65p00260 at 33.177 kb on - strand, within PGA1_65p00260 at 33.182 kb on - strand, within PGA1_65p00260 at 33.320 kb on + strand, within PGA1_65p00260 at 33.518 kb on + strand, within PGA1_65p00260 at 33.526 kb on - strand, within PGA1_65p00260 at 33.553 kb on + strand, within PGA1_65p00260 at 33.604 kb on + strand, within PGA1_65p00260 at 33.645 kb on + strand, within PGA1_65p00260 at 33.999 kb on + strand at 34.052 kb on + strand at 34.697 kb on - strand, within PGA1_65p00270 at 34.969 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.260 kb on - strand, within PGA1_65p00270 at 35.513 kb on - strand, within PGA1_65p00270 at 35.629 kb on - strand, within PGA1_65p00270 at 35.647 kb on - strand, within PGA1_65p00270 at 36.199 kb on + strand at 36.518 kb on + strand at 36.518 kb on + strand at 36.526 kb on - strand at 36.547 kb on + strand at 37.231 kb on + strand, within PGA1_65p00280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 33,104 + PGA1_65p00260 0.36 +0.9 33,112 - PGA1_65p00260 0.37 -1.7 33,154 + PGA1_65p00260 0.40 -2.1 33,177 - PGA1_65p00260 0.41 -1.7 33,182 - PGA1_65p00260 0.42 +1.9 33,320 + PGA1_65p00260 0.51 -1.7 33,518 + PGA1_65p00260 0.65 -0.1 33,526 - PGA1_65p00260 0.65 +0.4 33,553 + PGA1_65p00260 0.67 -0.1 33,604 + PGA1_65p00260 0.71 +0.4 33,645 + PGA1_65p00260 0.74 +0.6 33,999 + -0.1 34,052 + -0.1 34,697 - PGA1_65p00270 0.27 -0.1 34,969 - PGA1_65p00270 0.39 +0.9 35,002 - PGA1_65p00270 0.41 +0.4 35,002 - PGA1_65p00270 0.41 -0.1 35,004 + PGA1_65p00270 0.41 -0.1 35,004 + PGA1_65p00270 0.41 -0.1 35,004 + PGA1_65p00270 0.41 +0.9 35,004 + PGA1_65p00270 0.41 -1.1 35,012 - PGA1_65p00270 0.41 -2.1 35,012 - PGA1_65p00270 0.41 -0.1 35,012 - PGA1_65p00270 0.41 +1.4 35,012 - PGA1_65p00270 0.41 -0.1 35,012 - PGA1_65p00270 0.41 -0.1 35,012 - PGA1_65p00270 0.41 -0.7 35,260 - PGA1_65p00270 0.52 -1.1 35,513 - PGA1_65p00270 0.64 -1.1 35,629 - PGA1_65p00270 0.69 -1.1 35,647 - PGA1_65p00270 0.70 -1.1 36,199 + -0.1 36,518 + +0.3 36,518 + -0.1 36,526 - -1.1 36,547 + -0.1 37,231 + PGA1_65p00280 0.52 +0.9
Or see this region's nucleotide sequence