Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02090

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02070 and PGA1_262p02080 are separated by 236 nucleotidesPGA1_262p02080 and PGA1_262p02090 overlap by 4 nucleotidesPGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotidesPGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotides PGA1_262p02070: PGA1_262p02070 - hypothetical protein, at 225,618 to 225,896 _262p02070 PGA1_262p02080: PGA1_262p02080 - hypothetical protein, at 226,133 to 226,477 _262p02080 PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860 _262p02090 PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761 _262p02100 PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246 _262p02110 Position (kb) 226 227Strain fitness (log2 ratio) -2 -1 0 1 2 3at 225.580 kb on + strandat 225.582 kb on - strandat 225.585 kb on + strandat 225.611 kb on + strandat 225.612 kb on + strandat 225.764 kb on - strand, within PGA1_262p02070at 225.765 kb on - strand, within PGA1_262p02070at 226.107 kb on - strandat 226.107 kb on - strandat 226.117 kb on - strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.144 kb on - strandat 226.159 kb on + strandat 226.210 kb on - strand, within PGA1_262p02080at 226.283 kb on - strand, within PGA1_262p02080at 226.283 kb on - strand, within PGA1_262p02080at 226.288 kb on - strand, within PGA1_262p02080at 226.294 kb on + strand, within PGA1_262p02080at 226.302 kb on - strand, within PGA1_262p02080at 226.328 kb on + strand, within PGA1_262p02080at 226.400 kb on + strand, within PGA1_262p02080at 226.418 kb on - strand, within PGA1_262p02080at 226.422 kb on + strand, within PGA1_262p02080at 226.522 kb on + strand, within PGA1_262p02090at 226.606 kb on + strand, within PGA1_262p02090at 226.629 kb on + strand, within PGA1_262p02090at 226.665 kb on - strand, within PGA1_262p02090at 226.689 kb on - strand, within PGA1_262p02090at 226.779 kb on + strand, within PGA1_262p02090at 226.787 kb on - strand, within PGA1_262p02090at 226.824 kb on - strandat 226.896 kb on + strandat 226.896 kb on + strandat 226.899 kb on - strandat 226.902 kb on - strandat 226.902 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.949 kb on + strandat 226.976 kb on - strandat 227.014 kb on + strand, within PGA1_262p02100at 227.014 kb on + strand, within PGA1_262p02100at 227.022 kb on - strand, within PGA1_262p02100at 227.124 kb on + strand, within PGA1_262p02100at 227.143 kb on + strandat 227.143 kb on + strand, within PGA1_262p02100at 227.143 kb on + strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.181 kb on + strand, within PGA1_262p02100at 227.245 kb on - strand, within PGA1_262p02100at 227.247 kb on + strand, within PGA1_262p02100at 227.339 kb on - strand, within PGA1_262p02100at 227.371 kb on + strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.519 kb on + strand, within PGA1_262p02100at 227.522 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.566 kb on - strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.716 kb on + strandat 227.716 kb on + strandat 227.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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225,580 + -0.1
225,582 - -0.5
225,585 + -1.3
225,611 + +0.8
225,612 + -2.5
225,764 - PGA1_262p02070 0.52 -0.9
225,765 - PGA1_262p02070 0.53 -0.1
226,107 - -0.1
226,107 - -0.1
226,117 - +1.6
226,136 + -0.5
226,136 + -0.4
226,136 + -1.0
226,136 + -1.4
226,144 - -1.5
226,159 + -0.5
226,210 - PGA1_262p02080 0.22 -1.4
226,283 - PGA1_262p02080 0.43 +0.2
226,283 - PGA1_262p02080 0.43 -0.6
226,288 - PGA1_262p02080 0.45 -0.4
226,294 + PGA1_262p02080 0.47 +3.5
226,302 - PGA1_262p02080 0.49 -0.3
226,328 + PGA1_262p02080 0.57 +0.1
226,400 + PGA1_262p02080 0.77 -0.4
226,418 - PGA1_262p02080 0.83 -0.0
226,422 + PGA1_262p02080 0.84 -2.7
226,522 + PGA1_262p02090 0.12 -1.0
226,606 + PGA1_262p02090 0.34 -0.9
226,629 + PGA1_262p02090 0.40 -0.5
226,665 - PGA1_262p02090 0.49 -1.0
226,689 - PGA1_262p02090 0.56 -0.8
226,779 + PGA1_262p02090 0.79 -0.3
226,787 - PGA1_262p02090 0.81 -0.8
226,824 - +0.8
226,896 + +0.5
226,896 + +1.2
226,899 - +0.6
226,902 - -0.3
226,902 - +0.3
226,904 - +0.8
226,904 - -0.6
226,904 - +1.9
226,904 - -1.1
226,949 + -0.9
226,976 - +1.8
227,014 + PGA1_262p02100 0.13 +0.5
227,014 + PGA1_262p02100 0.13 -2.3
227,022 - PGA1_262p02100 0.14 -0.7
227,124 + PGA1_262p02100 0.26 -0.3
227,143 + +0.3
227,143 + PGA1_262p02100 0.28 +0.7
227,143 + PGA1_262p02100 0.28 -0.0
227,151 - PGA1_262p02100 0.29 +0.9
227,151 - PGA1_262p02100 0.29 -0.7
227,181 + PGA1_262p02100 0.33 +0.3
227,245 - PGA1_262p02100 0.40 -1.3
227,247 + PGA1_262p02100 0.40 +0.3
227,339 - PGA1_262p02100 0.51 -0.1
227,371 + PGA1_262p02100 0.55 +0.0
227,371 - PGA1_262p02100 0.55 +1.7
227,371 - PGA1_262p02100 0.55 +0.0
227,372 - PGA1_262p02100 0.55 -1.4
227,372 - PGA1_262p02100 0.55 -0.3
227,397 + PGA1_262p02100 0.58 -1.7
227,397 + PGA1_262p02100 0.58 -0.1
227,405 - PGA1_262p02100 0.59 +0.0
227,405 - PGA1_262p02100 0.59 +0.9
227,519 + PGA1_262p02100 0.72 +0.1
227,522 + PGA1_262p02100 0.72 +0.1
227,548 + PGA1_262p02100 0.75 +0.5
227,548 + PGA1_262p02100 0.75 -0.6
227,566 - PGA1_262p02100 0.77 -0.3
227,662 + PGA1_262p02100 0.88 -1.7
227,662 + PGA1_262p02100 0.88 -1.1
227,716 + +0.3
227,716 + +1.2
227,724 - -1.7

Or see this region's nucleotide sequence