Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03780 and PGA1_c03790 are separated by 212 nucleotides PGA1_c03790 and PGA1_c03800 are separated by 507 nucleotides
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
PGA1_c03790: PGA1_c03790 - hypothetical protein, at 364,112 to 364,303
_c03790
PGA1_c03800: PGA1_c03800 - putative lysine/ornithine decarboxylase, at 364,811 to 365,992
_c03800
Position (kb) 364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand at 363.970 kb on + strand at 364.001 kb on + strand at 364.006 kb on + strand at 364.083 kb on - strand at 364.109 kb on + strand at 364.175 kb on - strand, within PGA1_c03790 at 364.176 kb on - strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.219 kb on + strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.292 kb on + strand at 364.350 kb on - strand at 364.441 kb on - strand at 364.441 kb on - strand at 364.483 kb on - strand at 364.488 kb on + strand at 364.488 kb on - strand at 364.488 kb on - strand at 364.528 kb on - strand at 364.598 kb on + strand at 364.601 kb on - strand at 364.606 kb on - strand at 364.677 kb on + strand at 364.724 kb on + strand at 364.731 kb on + strand at 364.733 kb on - strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.901 kb on + strand at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 365.008 kb on - strand, within PGA1_c03800 at 365.041 kb on - strand, within PGA1_c03800 at 365.129 kb on + strand, within PGA1_c03800 at 365.215 kb on + strand, within PGA1_c03800 at 365.248 kb on + strand, within PGA1_c03800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 363,906 - -0.3 363,928 - +0.2 363,933 + +0.2 363,933 + -0.7 363,970 + -1.0 364,001 + +0.3 364,006 + -1.8 364,083 - -3.2 364,109 + -1.7 364,175 - PGA1_c03790 0.33 +1.2 364,176 - PGA1_c03790 0.33 -0.2 364,213 + PGA1_c03790 0.53 +1.0 364,213 + PGA1_c03790 0.53 -0.2 364,213 + PGA1_c03790 0.53 -0.4 364,213 + PGA1_c03790 0.53 -0.9 364,213 + PGA1_c03790 0.53 +0.6 364,213 + PGA1_c03790 0.53 -0.1 364,213 + PGA1_c03790 0.53 +1.1 364,213 + PGA1_c03790 0.53 -0.7 364,219 + PGA1_c03790 0.56 -1.6 364,221 - PGA1_c03790 0.57 -0.4 364,221 - PGA1_c03790 0.57 -2.6 364,221 - PGA1_c03790 0.57 -0.2 364,221 - PGA1_c03790 0.57 -0.2 364,221 - PGA1_c03790 0.57 -1.1 364,221 - PGA1_c03790 0.57 -0.3 364,221 - PGA1_c03790 0.57 -0.2 364,221 - PGA1_c03790 0.57 +0.7 364,292 + +0.2 364,350 - +1.7 364,441 - -1.5 364,441 - -3.5 364,483 - -2.2 364,488 + -1.1 364,488 - +1.1 364,488 - +0.1 364,528 - -0.5 364,598 + +0.1 364,601 - -1.6 364,606 - -1.3 364,677 + +0.1 364,724 + -1.3 364,731 + +0.9 364,733 - +0.9 364,882 + +0.9 364,882 + +0.6 364,882 + +0.4 364,882 + -1.6 364,890 - -2.6 364,890 - -1.0 364,890 - -2.1 364,901 + -0.3 364,970 + PGA1_c03800 0.13 -1.2 364,970 + PGA1_c03800 0.13 -1.0 364,970 + PGA1_c03800 0.13 -0.7 364,970 + PGA1_c03800 0.13 +0.5 364,970 + PGA1_c03800 0.13 +0.6 364,970 + PGA1_c03800 0.13 -1.1 364,970 + PGA1_c03800 0.13 -0.9 364,970 + PGA1_c03800 0.13 -0.3 364,970 + PGA1_c03800 0.13 -2.2 364,970 + PGA1_c03800 0.13 +0.1 364,970 + PGA1_c03800 0.13 -0.9 364,970 + PGA1_c03800 0.13 -0.6 364,970 + PGA1_c03800 0.13 +0.6 364,970 + PGA1_c03800 0.13 -0.8 364,978 - PGA1_c03800 0.14 +1.2 364,978 - PGA1_c03800 0.14 +0.4 364,978 - PGA1_c03800 0.14 -1.0 364,978 - PGA1_c03800 0.14 -1.5 364,978 - PGA1_c03800 0.14 +0.0 365,008 - PGA1_c03800 0.17 -0.1 365,041 - PGA1_c03800 0.19 -0.8 365,129 + PGA1_c03800 0.27 +1.2 365,215 + PGA1_c03800 0.34 -0.2 365,248 + PGA1_c03800 0.37 -1.6
Or see this region's nucleotide sequence