Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0365 and Psest_0366 are separated by 377 nucleotides Psest_0366 and Psest_0367 overlap by 11 nucleotides Psest_0367 and Psest_0368 are separated by 399 nucleotides
Psest_0365: Psest_0365 - NAD dependent epimerase/dehydratase family., at 391,344 to 392,159
_0365
Psest_0366: Psest_0366 - Predicted membrane protein, at 392,537 to 392,845
_0366
Psest_0367: Psest_0367 - Predicted branched-chain amino acid permease (azaleucine resistance), at 392,835 to 393,551
_0367
Psest_0368: Psest_0368 - Transcriptional regulator, at 393,951 to 394,865
_0368
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 391.855 kb on + strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.859 kb on + strand, within Psest_0365 at 391.859 kb on + strand, within Psest_0365 at 391.860 kb on - strand, within Psest_0365 at 392.065 kb on + strand, within Psest_0365 at 392.154 kb on - strand at 392.215 kb on - strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.274 kb on + strand at 392.274 kb on + strand at 392.275 kb on - strand at 392.275 kb on - strand at 392.275 kb on - strand at 392.313 kb on + strand at 392.313 kb on + strand at 392.313 kb on + strand at 392.314 kb on - strand at 392.314 kb on - strand at 392.314 kb on - strand at 392.482 kb on - strand at 392.923 kb on + strand, within Psest_0367 at 393.256 kb on + strand, within Psest_0367 at 393.256 kb on + strand, within Psest_0367 at 393.620 kb on + strand at 393.620 kb on + strand at 393.620 kb on + strand at 393.621 kb on - strand at 393.621 kb on - strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.737 kb on - strand at 393.737 kb on - strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.749 kb on + strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.952 kb on + strand at 394.102 kb on - strand, within Psest_0368 at 394.283 kb on - strand, within Psest_0368
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 391,855 + Psest_0365 0.63 +0.1 391,856 - Psest_0365 0.63 -1.1 391,856 - Psest_0365 0.63 +0.8 391,856 - Psest_0365 0.63 +2.7 391,859 + Psest_0365 0.63 +2.1 391,859 + Psest_0365 0.63 +0.5 391,860 - Psest_0365 0.63 -0.7 392,065 + Psest_0365 0.88 -0.2 392,154 - -0.4 392,215 - +2.0 392,272 + -1.0 392,272 + -0.4 392,272 + -0.2 392,272 + -0.9 392,273 - -1.0 392,273 - +0.1 392,273 - +0.3 392,273 - +0.3 392,273 - -0.7 392,273 - -0.4 392,273 - +2.0 392,273 - -0.0 392,273 - +1.1 392,273 - -1.3 392,273 - +1.1 392,273 - -0.6 392,273 - +1.6 392,273 - +1.6 392,273 - +0.6 392,273 - -1.1 392,273 - -0.9 392,273 - -0.2 392,273 - -0.9 392,273 - -2.6 392,274 + -0.7 392,274 + -0.7 392,275 - -3.1 392,275 - -0.6 392,275 - +0.1 392,313 + +2.7 392,313 + +1.1 392,313 + +2.1 392,314 - +0.1 392,314 - -0.1 392,314 - -0.7 392,482 - +0.6 392,923 + Psest_0367 0.12 -0.4 393,256 + Psest_0367 0.59 -1.4 393,256 + Psest_0367 0.59 -1.6 393,620 + +0.6 393,620 + -0.7 393,620 + +1.1 393,621 - -0.6 393,621 - -0.7 393,718 + +3.1 393,718 + +0.1 393,718 + +2.1 393,718 + +2.4 393,718 + +3.1 393,737 - -1.0 393,737 - -1.7 393,740 + +1.1 393,740 + +0.6 393,740 + +0.1 393,740 + +0.6 393,741 - -0.7 393,741 - -1.4 393,741 - -0.5 393,741 - +0.1 393,749 + +1.1 393,750 - -0.7 393,750 - +0.8 393,750 - +0.1 393,750 - -1.2 393,952 + -0.3 394,102 - Psest_0368 0.17 +0.1 394,283 - Psest_0368 0.36 -0.4
Or see this region's nucleotide sequence