Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3635

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3633 and Psest_3634 are separated by 119 nucleotidesPsest_3634 and Psest_3635 are separated by 22 nucleotidesPsest_3635 and Psest_3636 are separated by 170 nucleotides Psest_3633: Psest_3633 - 16S rRNA, at 3,794,388 to 3,795,806 _3633 Psest_3634: Psest_3634 - hypothetical protein, at 3,795,926 to 3,796,366 _3634 Psest_3635: Psest_3635 - tyrosyl-tRNA synthetase, at 3,796,389 to 3,797,594 _3635 Psest_3636: Psest_3636 - Membrane proteins related to metalloendopeptidases, at 3,797,765 to 3,799,174 _3636 Position (kb) 3796 3797 3798Strain fitness (log2 ratio) -1 0 1 2at 3797.605 kb on - strandat 3797.605 kb on - strandat 3797.607 kb on - strandat 3797.607 kb on - strandat 3797.607 kb on - strandat 3797.613 kb on - strandat 3797.632 kb on - strandat 3797.632 kb on - strandat 3797.632 kb on - strandat 3797.715 kb on + strandat 3797.730 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,797,605 - -0.0
3,797,605 - +2.6
3,797,607 - +0.6
3,797,607 - +0.3
3,797,607 - -1.5
3,797,613 - +0.6
3,797,632 - -0.0
3,797,632 - -0.1
3,797,632 - +1.0
3,797,715 + -0.6
3,797,730 + -0.0

Or see this region's nucleotide sequence