Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35730

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35710 and PGA1_c35720 overlap by 4 nucleotidesPGA1_c35720 and PGA1_c35730 overlap by 4 nucleotidesPGA1_c35730 and PGA1_c35740 overlap by 1 nucleotidesPGA1_c35740 and PGA1_c35750 are separated by 76 nucleotidesPGA1_c35750 and PGA1_c35760 are separated by 9 nucleotides PGA1_c35710: PGA1_c35710 - flagellar biosynthetic protein FlhA, at 3,743,998 to 3,746,091 _c35710 PGA1_c35720: PGA1_c35720 - flagellar biosynthetic protein FliR, at 3,746,088 to 3,746,867 _c35720 PGA1_c35730: PGA1_c35730 - flagellar biosynthetic protein FlhB, at 3,746,864 to 3,747,943 _c35730 PGA1_c35740: PGA1_c35740 - hypothetical protein, at 3,747,943 to 3,748,344 _c35740 PGA1_c35750: PGA1_c35750 - putative flagellar basal body-associated protein FliL, at 3,748,421 to 3,748,903 _c35750 PGA1_c35760: PGA1_c35760 - flagellar L-ring protein FlgH, at 3,748,913 to 3,749,653 _c35760 Position (kb) 3746 3747 3748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3745.877 kb on + strand, within PGA1_c35710at 3745.885 kb on - strandat 3745.915 kb on - strandat 3745.957 kb on + strandat 3745.965 kb on - strandat 3745.967 kb on + strandat 3745.972 kb on - strandat 3746.029 kb on - strandat 3746.029 kb on - strandat 3746.041 kb on - strandat 3746.043 kb on + strandat 3746.051 kb on - strandat 3746.130 kb on - strandat 3746.181 kb on + strand, within PGA1_c35720at 3746.225 kb on + strand, within PGA1_c35720at 3746.225 kb on + strand, within PGA1_c35720at 3746.271 kb on + strand, within PGA1_c35720at 3746.422 kb on + strand, within PGA1_c35720at 3746.422 kb on + strand, within PGA1_c35720at 3746.422 kb on + strand, within PGA1_c35720at 3746.488 kb on + strand, within PGA1_c35720at 3746.496 kb on - strand, within PGA1_c35720at 3746.528 kb on - strand, within PGA1_c35720at 3746.555 kb on - strand, within PGA1_c35720at 3746.590 kb on + strand, within PGA1_c35720at 3746.598 kb on - strand, within PGA1_c35720at 3746.603 kb on + strand, within PGA1_c35720at 3746.634 kb on + strand, within PGA1_c35720at 3746.689 kb on + strand, within PGA1_c35720at 3746.697 kb on - strand, within PGA1_c35720at 3746.703 kb on + strand, within PGA1_c35720at 3746.707 kb on - strand, within PGA1_c35720at 3746.708 kb on + strand, within PGA1_c35720at 3746.711 kb on - strand, within PGA1_c35720at 3746.729 kb on + strand, within PGA1_c35720at 3746.757 kb on - strand, within PGA1_c35720at 3746.770 kb on - strand, within PGA1_c35720at 3746.816 kb on - strandat 3746.894 kb on - strandat 3746.903 kb on - strandat 3746.911 kb on - strandat 3746.939 kb on + strandat 3746.959 kb on + strandat 3746.964 kb on - strandat 3747.017 kb on - strand, within PGA1_c35730at 3747.034 kb on - strand, within PGA1_c35730at 3747.050 kb on + strand, within PGA1_c35730at 3747.063 kb on - strand, within PGA1_c35730at 3747.138 kb on + strand, within PGA1_c35730at 3747.146 kb on - strand, within PGA1_c35730at 3747.189 kb on + strand, within PGA1_c35730at 3747.208 kb on + strand, within PGA1_c35730at 3747.208 kb on + strand, within PGA1_c35730at 3747.215 kb on + strand, within PGA1_c35730at 3747.220 kb on + strand, within PGA1_c35730at 3747.220 kb on + strand, within PGA1_c35730at 3747.271 kb on + strand, within PGA1_c35730at 3747.277 kb on + strand, within PGA1_c35730at 3747.328 kb on + strand, within PGA1_c35730at 3747.401 kb on - strand, within PGA1_c35730at 3747.472 kb on + strand, within PGA1_c35730at 3747.474 kb on + strand, within PGA1_c35730at 3747.524 kb on + strand, within PGA1_c35730at 3747.556 kb on + strand, within PGA1_c35730at 3747.574 kb on - strand, within PGA1_c35730at 3747.583 kb on + strand, within PGA1_c35730at 3747.625 kb on + strand, within PGA1_c35730at 3747.625 kb on + strand, within PGA1_c35730at 3747.626 kb on + strand, within PGA1_c35730at 3747.626 kb on + strand, within PGA1_c35730at 3747.626 kb on + strand, within PGA1_c35730at 3747.626 kb on + strand, within PGA1_c35730at 3747.700 kb on + strand, within PGA1_c35730at 3747.732 kb on - strand, within PGA1_c35730at 3747.736 kb on + strand, within PGA1_c35730at 3747.754 kb on + strand, within PGA1_c35730at 3747.925 kb on + strandat 3747.925 kb on + strandat 3747.932 kb on + strandat 3747.933 kb on - strandat 3747.976 kb on - strandat 3747.977 kb on + strandat 3748.019 kb on - strand, within PGA1_c35740at 3748.085 kb on + strand, within PGA1_c35740at 3748.100 kb on + strand, within PGA1_c35740at 3748.103 kb on - strand, within PGA1_c35740at 3748.108 kb on - strand, within PGA1_c35740at 3748.155 kb on - strand, within PGA1_c35740at 3748.157 kb on + strand, within PGA1_c35740at 3748.228 kb on - strand, within PGA1_c35740at 3748.239 kb on + strand, within PGA1_c35740at 3748.258 kb on + strand, within PGA1_c35740at 3748.258 kb on + strand, within PGA1_c35740at 3748.258 kb on + strand, within PGA1_c35740at 3748.266 kb on - strand, within PGA1_c35740at 3748.266 kb on - strand, within PGA1_c35740at 3748.315 kb on + strandat 3748.350 kb on + strandat 3748.379 kb on + strandat 3748.406 kb on + strandat 3748.406 kb on + strandat 3748.406 kb on + strandat 3748.411 kb on + strandat 3748.475 kb on - strand, within PGA1_c35750at 3748.481 kb on + strand, within PGA1_c35750at 3748.481 kb on + strand, within PGA1_c35750at 3748.489 kb on - strand, within PGA1_c35750at 3748.491 kb on + strand, within PGA1_c35750at 3748.499 kb on - strand, within PGA1_c35750at 3748.509 kb on - strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.535 kb on + strand, within PGA1_c35750at 3748.543 kb on - strand, within PGA1_c35750at 3748.543 kb on - strand, within PGA1_c35750at 3748.603 kb on + strand, within PGA1_c35750at 3748.603 kb on + strand, within PGA1_c35750at 3748.603 kb on + strand, within PGA1_c35750at 3748.603 kb on + strand, within PGA1_c35750at 3748.611 kb on - strand, within PGA1_c35750at 3748.642 kb on - strand, within PGA1_c35750at 3748.662 kb on - strand, within PGA1_c35750at 3748.662 kb on - strand, within PGA1_c35750at 3748.672 kb on + strand, within PGA1_c35750at 3748.672 kb on - strand, within PGA1_c35750at 3748.685 kb on - strand, within PGA1_c35750at 3748.685 kb on - strand, within PGA1_c35750at 3748.687 kb on + strand, within PGA1_c35750at 3748.692 kb on - strand, within PGA1_c35750at 3748.747 kb on - strand, within PGA1_c35750at 3748.765 kb on + strand, within PGA1_c35750at 3748.765 kb on + strand, within PGA1_c35750at 3748.821 kb on - strand, within PGA1_c35750

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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3,745,877 + PGA1_c35710 0.90 -1.8
3,745,885 - -3.8
3,745,915 - -0.3
3,745,957 + -2.4
3,745,965 - -2.0
3,745,967 + +0.1
3,745,972 - +0.3
3,746,029 - -0.7
3,746,029 - -0.1
3,746,041 - -3.3
3,746,043 + -1.2
3,746,051 - +0.0
3,746,130 - -0.9
3,746,181 + PGA1_c35720 0.12 -1.4
3,746,225 + PGA1_c35720 0.18 -1.4
3,746,225 + PGA1_c35720 0.18 -0.8
3,746,271 + PGA1_c35720 0.23 -1.5
3,746,422 + PGA1_c35720 0.43 -0.9
3,746,422 + PGA1_c35720 0.43 -1.4
3,746,422 + PGA1_c35720 0.43 -0.6
3,746,488 + PGA1_c35720 0.51 -1.8
3,746,496 - PGA1_c35720 0.52 -0.4
3,746,528 - PGA1_c35720 0.56 -3.7
3,746,555 - PGA1_c35720 0.60 +0.3
3,746,590 + PGA1_c35720 0.64 -1.5
3,746,598 - PGA1_c35720 0.65 -0.4
3,746,603 + PGA1_c35720 0.66 -1.9
3,746,634 + PGA1_c35720 0.70 -1.5
3,746,689 + PGA1_c35720 0.77 -1.2
3,746,697 - PGA1_c35720 0.78 -1.8
3,746,703 + PGA1_c35720 0.79 -0.5
3,746,707 - PGA1_c35720 0.79 -0.7
3,746,708 + PGA1_c35720 0.79 -0.9
3,746,711 - PGA1_c35720 0.80 -0.2
3,746,729 + PGA1_c35720 0.82 -0.4
3,746,757 - PGA1_c35720 0.86 +0.1
3,746,770 - PGA1_c35720 0.87 -1.5
3,746,816 - -2.8
3,746,894 - -1.4
3,746,903 - -2.8
3,746,911 - -0.5
3,746,939 + -3.0
3,746,959 + +1.2
3,746,964 - +1.5
3,747,017 - PGA1_c35730 0.14 -0.7
3,747,034 - PGA1_c35730 0.16 +0.5
3,747,050 + PGA1_c35730 0.17 -2.8
3,747,063 - PGA1_c35730 0.18 -0.1
3,747,138 + PGA1_c35730 0.25 -1.3
3,747,146 - PGA1_c35730 0.26 -0.0
3,747,189 + PGA1_c35730 0.30 +0.2
3,747,208 + PGA1_c35730 0.32 -1.4
3,747,208 + PGA1_c35730 0.32 +0.2
3,747,215 + PGA1_c35730 0.33 -1.1
3,747,220 + PGA1_c35730 0.33 -3.4
3,747,220 + PGA1_c35730 0.33 -1.3
3,747,271 + PGA1_c35730 0.38 -1.6
3,747,277 + PGA1_c35730 0.38 -0.5
3,747,328 + PGA1_c35730 0.43 -2.6
3,747,401 - PGA1_c35730 0.50 -0.8
3,747,472 + PGA1_c35730 0.56 -1.5
3,747,474 + PGA1_c35730 0.56 -0.9
3,747,524 + PGA1_c35730 0.61 -2.9
3,747,556 + PGA1_c35730 0.64 -1.4
3,747,574 - PGA1_c35730 0.66 -0.2
3,747,583 + PGA1_c35730 0.67 -0.6
3,747,625 + PGA1_c35730 0.70 -2.9
3,747,625 + PGA1_c35730 0.70 +0.2
3,747,626 + PGA1_c35730 0.71 -1.5
3,747,626 + PGA1_c35730 0.71 -0.8
3,747,626 + PGA1_c35730 0.71 -0.7
3,747,626 + PGA1_c35730 0.71 -2.5
3,747,700 + PGA1_c35730 0.77 -0.9
3,747,732 - PGA1_c35730 0.80 -0.9
3,747,736 + PGA1_c35730 0.81 +0.0
3,747,754 + PGA1_c35730 0.82 +1.7
3,747,925 + -1.0
3,747,925 + -0.3
3,747,932 + -0.4
3,747,933 - -0.4
3,747,976 - -0.9
3,747,977 + -0.8
3,748,019 - PGA1_c35740 0.19 -1.4
3,748,085 + PGA1_c35740 0.35 -2.2
3,748,100 + PGA1_c35740 0.39 -1.5
3,748,103 - PGA1_c35740 0.40 +0.1
3,748,108 - PGA1_c35740 0.41 -1.1
3,748,155 - PGA1_c35740 0.53 -3.0
3,748,157 + PGA1_c35740 0.53 -1.8
3,748,228 - PGA1_c35740 0.71 -0.5
3,748,239 + PGA1_c35740 0.74 -1.0
3,748,258 + PGA1_c35740 0.78 -0.4
3,748,258 + PGA1_c35740 0.78 -0.6
3,748,258 + PGA1_c35740 0.78 -0.2
3,748,266 - PGA1_c35740 0.80 -0.6
3,748,266 - PGA1_c35740 0.80 +0.3
3,748,315 + +0.0
3,748,350 + +0.6
3,748,379 + +0.9
3,748,406 + +1.3
3,748,406 + -0.9
3,748,406 + -0.4
3,748,411 + -1.1
3,748,475 - PGA1_c35750 0.11 +0.8
3,748,481 + PGA1_c35750 0.12 -2.6
3,748,481 + PGA1_c35750 0.12 +1.5
3,748,489 - PGA1_c35750 0.14 +0.2
3,748,491 + PGA1_c35750 0.14 -1.1
3,748,499 - PGA1_c35750 0.16 -0.4
3,748,509 - PGA1_c35750 0.18 -0.6
3,748,535 + PGA1_c35750 0.24 -1.8
3,748,535 + PGA1_c35750 0.24 -1.6
3,748,535 + PGA1_c35750 0.24 -1.1
3,748,535 + PGA1_c35750 0.24 -0.8
3,748,535 + PGA1_c35750 0.24 -2.8
3,748,535 + PGA1_c35750 0.24 -0.9
3,748,535 + PGA1_c35750 0.24 +0.4
3,748,535 + PGA1_c35750 0.24 -2.5
3,748,535 + PGA1_c35750 0.24 -0.2
3,748,543 - PGA1_c35750 0.25 -0.4
3,748,543 - PGA1_c35750 0.25 -2.0
3,748,603 + PGA1_c35750 0.38 -1.1
3,748,603 + PGA1_c35750 0.38 -1.2
3,748,603 + PGA1_c35750 0.38 -0.6
3,748,603 + PGA1_c35750 0.38 -0.2
3,748,611 - PGA1_c35750 0.39 -1.8
3,748,642 - PGA1_c35750 0.46 -1.7
3,748,662 - PGA1_c35750 0.50 +0.9
3,748,662 - PGA1_c35750 0.50 -1.4
3,748,672 + PGA1_c35750 0.52 -0.5
3,748,672 - PGA1_c35750 0.52 -1.0
3,748,685 - PGA1_c35750 0.55 -1.9
3,748,685 - PGA1_c35750 0.55 -1.9
3,748,687 + PGA1_c35750 0.55 -2.7
3,748,692 - PGA1_c35750 0.56 -2.6
3,748,747 - PGA1_c35750 0.67 +1.0
3,748,765 + PGA1_c35750 0.71 -0.1
3,748,765 + PGA1_c35750 0.71 -2.4
3,748,821 - PGA1_c35750 0.83 +0.1

Or see this region's nucleotide sequence