Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03600 and PGA1_c03610 are separated by 264 nucleotides PGA1_c03610 and PGA1_c03620 are separated by 12 nucleotides PGA1_c03620 and PGA1_c03630 are separated by 2 nucleotides
PGA1_c03600: PGA1_c03600 - 2-oxoglutarate dehydrogenase E1 component SucA, at 345,766 to 348,723
_c03600
PGA1_c03610: PGA1_c03610 - succinyl-CoA ligase [ADP-forming] subunit alpha, at 348,988 to 349,872
_c03610
PGA1_c03620: PGA1_c03620 - hypothetical protein, at 349,885 to 350,238
_c03620
PGA1_c03630: PGA1_c03630 - succinyl-CoA ligase [ADP-forming] subunit beta, at 350,241 to 351,434
_c03630
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1
2
3 at 348.739 kb on - strand at 348.759 kb on - strand at 348.798 kb on + strand at 348.840 kb on + strand at 348.910 kb on - strand at 349.977 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.075 kb on - strand, within PGA1_c03620 at 350.075 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.149 kb on - strand, within PGA1_c03620 at 350.180 kb on - strand, within PGA1_c03620 at 350.214 kb on - strand at 350.246 kb on - strand at 350.246 kb on - strand at 350.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 348,739 - +1.9 348,759 - +2.3 348,798 + +1.1 348,840 + +1.9 348,910 - +3.0 349,977 - PGA1_c03620 0.26 +0.2 350,050 - PGA1_c03620 0.47 -0.1 350,050 - PGA1_c03620 0.47 -0.0 350,050 - PGA1_c03620 0.47 -0.7 350,050 - PGA1_c03620 0.47 -1.6 350,050 - PGA1_c03620 0.47 +0.5 350,050 - PGA1_c03620 0.47 +1.3 350,050 - PGA1_c03620 0.47 +1.9 350,075 - PGA1_c03620 0.54 +0.3 350,075 - PGA1_c03620 0.54 +0.6 350,094 - PGA1_c03620 0.59 +1.6 350,094 - PGA1_c03620 0.59 +0.4 350,094 - PGA1_c03620 0.59 +0.2 350,094 - PGA1_c03620 0.59 +0.7 350,094 - PGA1_c03620 0.59 +0.1 350,149 - PGA1_c03620 0.75 +1.0 350,180 - PGA1_c03620 0.83 -0.0 350,214 - -1.0 350,246 - +1.4 350,246 - -1.3 350,246 - -1.5
Or see this region's nucleotide sequence