Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0348 and Psest_0349 are separated by 178 nucleotides Psest_0349 and Psest_0350 overlap by 4 nucleotides Psest_0350 and Psest_0351 are separated by 181 nucleotides Psest_0351 and Psest_0352 are separated by 11 nucleotides
Psest_0348: Psest_0348 - hypothetical protein, at 372,098 to 372,616
_0348
Psest_0349: Psest_0349 - DNA polymerase III, alpha subunit (gram-positive type), at 372,795 to 373,502
_0349
Psest_0350: Psest_0350 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 373,499 to 375,433
_0350
Psest_0351: Psest_0351 - hypothetical protein, at 375,615 to 376,019
_0351
Psest_0352: Psest_0352 - hypothetical protein, at 376,031 to 377,200
_0352
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 372.587 kb on + strand at 372.587 kb on + strand at 372.588 kb on - strand at 372.595 kb on + strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.959 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.974 kb on - strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.289 kb on - strand, within Psest_0349 at 373.384 kb on - strand, within Psest_0349 at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.274 kb on + strand, within Psest_0350 at 374.275 kb on - strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.280 kb on - strand at 375.280 kb on - strand at 375.280 kb on - strand at 375.348 kb on + strand at 375.348 kb on + strand at 375.348 kb on + strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.379 kb on + strand at 375.380 kb on - strand at 375.389 kb on + strand at 375.389 kb on + strand at 375.492 kb on + strand at 375.492 kb on + strand at 375.492 kb on + strand at 375.493 kb on - strand at 375.560 kb on - strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.571 kb on - strand at 375.598 kb on + strand at 375.598 kb on + strand at 375.670 kb on + strand, within Psest_0351 at 375.671 kb on - strand, within Psest_0351 at 375.708 kb on + strand, within Psest_0351 at 375.775 kb on + strand, within Psest_0351 at 375.775 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 376.038 kb on - strand at 376.074 kb on + strand at 376.074 kb on + strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.230 kb on + strand, within Psest_0352 at 376.230 kb on + strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.336 kb on - strand, within Psest_0352 at 376.419 kb on + strand, within Psest_0352 at 376.419 kb on + strand, within Psest_0352 at 376.420 kb on - strand, within Psest_0352 at 376.425 kb on + strand, within Psest_0352
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 372,587 + +0.1 372,587 + +1.1 372,588 - -2.1 372,595 + -0.5 372,596 - -1.0 372,596 - +0.2 372,596 - -1.4 372,618 + -1.0 372,618 + -0.0 372,618 + +1.1 372,618 + -1.5 372,618 + -0.7 372,618 + +1.1 372,618 + -0.1 372,760 - -0.2 372,760 - +0.6 372,760 - +1.1 372,959 + Psest_0349 0.23 -1.6 372,973 + Psest_0349 0.25 +3.1 372,973 + Psest_0349 0.25 +1.4 372,973 + Psest_0349 0.25 -1.4 372,974 - Psest_0349 0.25 +0.9 373,023 + Psest_0349 0.32 -1.6 373,023 + Psest_0349 0.32 -0.6 373,023 + Psest_0349 0.32 -0.3 373,024 - Psest_0349 0.32 -1.6 373,024 - Psest_0349 0.32 -1.5 373,024 - Psest_0349 0.32 -2.3 373,024 - Psest_0349 0.32 -0.9 373,024 - Psest_0349 0.32 -0.3 373,289 - Psest_0349 0.70 -1.0 373,384 - Psest_0349 0.83 -2.8 373,496 + +0.5 373,496 + -2.0 373,496 + -2.3 373,496 + -2.5 373,496 + -1.9 373,496 + -0.9 373,496 + -1.8 373,496 + -1.0 373,496 + -2.5 373,496 + -2.2 373,497 - +0.4 373,497 - -0.6 373,497 - -1.8 373,497 - -1.7 373,497 - -1.0 373,497 - +0.6 373,497 - -0.6 373,497 - -0.1 373,497 - -0.5 373,502 + -0.4 373,502 + +0.5 373,502 + -0.1 373,502 + -0.4 373,502 + -2.9 373,502 + +0.5 373,502 + +0.3 373,502 + +2.5 373,502 + +0.5 373,502 + +0.9 373,502 + -1.0 373,677 + +2.1 373,677 + +3.0 373,677 + +2.7 374,025 + Psest_0350 0.27 +3.8 374,025 + Psest_0350 0.27 +4.2 374,025 + Psest_0350 0.27 +3.1 374,025 + Psest_0350 0.27 +1.5 374,025 + Psest_0350 0.27 +3.6 374,025 + Psest_0350 0.27 +2.4 374,026 - Psest_0350 0.27 +3.4 374,026 - Psest_0350 0.27 +2.1 374,026 - Psest_0350 0.27 +2.1 374,026 - Psest_0350 0.27 -1.8 374,026 - Psest_0350 0.27 +3.0 374,026 - Psest_0350 0.27 +2.2 374,026 - Psest_0350 0.27 -0.2 374,026 - Psest_0350 0.27 +2.4 374,274 + Psest_0350 0.40 +1.7 374,275 - Psest_0350 0.40 +1.7 374,673 + Psest_0350 0.61 +0.8 374,673 + Psest_0350 0.61 +3.1 374,673 + Psest_0350 0.61 +4.2 374,673 + Psest_0350 0.61 +4.7 374,673 + Psest_0350 0.61 +4.1 374,673 + Psest_0350 0.61 +3.0 374,674 - Psest_0350 0.61 +1.6 374,674 - Psest_0350 0.61 -0.2 374,674 - Psest_0350 0.61 -0.3 374,674 - Psest_0350 0.61 -0.3 375,225 + Psest_0350 0.89 +2.1 375,225 + Psest_0350 0.89 +2.0 375,225 + Psest_0350 0.89 +3.0 375,225 + Psest_0350 0.89 +4.2 375,225 + Psest_0350 0.89 +2.9 375,225 + Psest_0350 0.89 +3.0 375,225 + Psest_0350 0.89 +2.9 375,225 + Psest_0350 0.89 +3.3 375,225 + Psest_0350 0.89 +3.8 375,225 + Psest_0350 0.89 +3.7 375,225 + Psest_0350 0.89 +3.8 375,226 - Psest_0350 0.89 +0.8 375,226 - Psest_0350 0.89 -0.9 375,226 - Psest_0350 0.89 -0.2 375,226 - Psest_0350 0.89 -1.0 375,279 + +3.4 375,279 + +2.9 375,279 + +2.9 375,279 + +3.7 375,279 + +2.9 375,279 + +3.8 375,280 - -1.3 375,280 - -0.9 375,280 - -1.9 375,348 + +3.5 375,348 + +3.5 375,348 + +4.5 375,349 - -0.6 375,349 - -1.7 375,349 - +1.4 375,349 - +0.3 375,349 - +1.1 375,379 + +4.2 375,380 - -1.3 375,389 + +0.1 375,389 + +1.3 375,492 + +0.5 375,492 + +1.1 375,492 + -1.1 375,493 - -0.5 375,560 - +1.5 375,562 + +0.2 375,562 + +0.6 375,562 + -0.3 375,562 + +1.3 375,562 + +1.5 375,562 + -0.8 375,563 - +0.5 375,563 - +0.2 375,563 - -0.6 375,563 - -1.3 375,571 - +0.1 375,598 + +0.5 375,598 + +2.0 375,670 + Psest_0351 0.14 -0.8 375,671 - Psest_0351 0.14 +2.0 375,708 + Psest_0351 0.23 +0.3 375,775 + Psest_0351 0.40 -0.7 375,775 + Psest_0351 0.40 +0.5 375,817 + Psest_0351 0.50 +0.1 375,817 + Psest_0351 0.50 -1.7 375,817 + Psest_0351 0.50 -0.0 375,817 + Psest_0351 0.50 -0.2 375,818 - Psest_0351 0.50 +0.2 375,818 - Psest_0351 0.50 +0.5 375,818 - Psest_0351 0.50 +2.5 375,818 - Psest_0351 0.50 +2.0 375,818 - Psest_0351 0.50 +1.5 375,818 - Psest_0351 0.50 +1.4 375,818 - Psest_0351 0.50 +1.3 375,818 - Psest_0351 0.50 -0.2 375,818 - Psest_0351 0.50 +1.3 375,818 - Psest_0351 0.50 -0.0 376,038 - +0.7 376,074 + -0.8 376,074 + -0.2 376,075 - -0.3 376,075 - +1.1 376,075 - +1.1 376,075 - +0.5 376,194 + Psest_0352 0.14 -1.8 376,194 + Psest_0352 0.14 +0.1 376,194 + Psest_0352 0.14 -0.5 376,194 + Psest_0352 0.14 -0.6 376,195 - Psest_0352 0.14 +0.3 376,195 - Psest_0352 0.14 +2.1 376,195 - Psest_0352 0.14 +0.4 376,230 + Psest_0352 0.17 -0.0 376,230 + Psest_0352 0.17 -0.5 376,231 - Psest_0352 0.17 +0.7 376,231 - Psest_0352 0.17 +0.8 376,231 - Psest_0352 0.17 +0.2 376,287 + Psest_0352 0.22 -0.7 376,287 + Psest_0352 0.22 -1.7 376,287 + Psest_0352 0.22 -1.5 376,287 + Psest_0352 0.22 -1.5 376,287 + Psest_0352 0.22 -1.5 376,288 - Psest_0352 0.22 +0.7 376,288 - Psest_0352 0.22 +0.2 376,288 - Psest_0352 0.22 -0.0 376,288 - Psest_0352 0.22 +1.1 376,288 - Psest_0352 0.22 +0.1 376,288 - Psest_0352 0.22 -0.9 376,288 - Psest_0352 0.22 -0.1 376,288 - Psest_0352 0.22 +2.4 376,288 - Psest_0352 0.22 +0.1 376,288 - Psest_0352 0.22 +0.5 376,288 - Psest_0352 0.22 +0.0 376,335 + Psest_0352 0.26 +0.7 376,335 + Psest_0352 0.26 -0.5 376,335 + Psest_0352 0.26 -0.4 376,335 + Psest_0352 0.26 +0.1 376,335 + Psest_0352 0.26 +1.1 376,336 - Psest_0352 0.26 +0.8 376,419 + Psest_0352 0.33 -1.0 376,419 + Psest_0352 0.33 +0.2 376,420 - Psest_0352 0.33 +0.3 376,425 + Psest_0352 0.34 -1.3
Or see this region's nucleotide sequence