Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03600

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03590 and PGA1_c03600 are separated by 6 nucleotidesPGA1_c03600 and PGA1_c03610 are separated by 264 nucleotides PGA1_c03590: PGA1_c03590 - dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 344,209 to 345,759 _c03590 PGA1_c03600: PGA1_c03600 - 2-oxoglutarate dehydrogenase E1 component SucA, at 345,766 to 348,723 _c03600 PGA1_c03610: PGA1_c03610 - succinyl-CoA ligase [ADP-forming] subunit alpha, at 348,988 to 349,872 _c03610 Position (kb) 345 346 347 348 349Strain fitness (log2 ratio) -1 0 1 2 3at 348.739 kb on - strandat 348.759 kb on - strandat 348.798 kb on + strandat 348.840 kb on + strandat 348.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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348,739 - +1.9
348,759 - +2.3
348,798 + +1.1
348,840 + +1.9
348,910 - +3.0

Or see this region's nucleotide sequence