Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3350

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,517,226	+				-0.8
3,517,226	+				+0.5
3,517,226	+				+1.6
3,517,227	-				-0.3
3,517,227	-				+0.0
3,517,227	-				+1.0
3,517,547	+		Psest_3349	0.38	-1.2
3,517,547	+		Psest_3349	0.38	-0.9
3,517,548	-		Psest_3349	0.38	+0.8
3,517,548	-		Psest_3349	0.38	+0.5
3,517,548	-		Psest_3349	0.38	-0.8
3,517,603	+		Psest_3349	0.46	+0.6
3,517,603	+		Psest_3349	0.46	+0.8
3,517,603	+		Psest_3349	0.46	+0.4
3,517,603	+		Psest_3349	0.46	+2.0
3,517,603	+		Psest_3349	0.46	+1.2
3,517,603	+		Psest_3349	0.46	+2.6
3,517,603	+		Psest_3349	0.46	+1.4
3,517,603	+		Psest_3349	0.46	+0.5
3,517,603	+		Psest_3349	0.46	-1.2
3,517,603	+		Psest_3349	0.46	+0.3
3,517,603	+		Psest_3349	0.46	+0.6
3,517,603	+		Psest_3349	0.46	+0.5
3,517,603	+		Psest_3349	0.46	-1.4
3,517,603	+		Psest_3349	0.46	-0.1
3,517,603	+		Psest_3349	0.46	+0.2
3,517,603	+		Psest_3349	0.46	+0.5
3,517,604	-		Psest_3349	0.46	+0.4
3,517,604	-		Psest_3349	0.46	-0.3
3,517,604	-		Psest_3349	0.46	-0.7
3,517,604	-		Psest_3349	0.46	-0.1
3,517,604	-		Psest_3349	0.46	+2.4
3,517,604	-		Psest_3349	0.46	+0.4
3,517,604	-		Psest_3349	0.46	+0.0
3,517,760	+		Psest_3349	0.67	+0.8
3,517,760	+		Psest_3349	0.67	+0.3
3,517,761	-		Psest_3349	0.67	-0.4
3,517,780	+		Psest_3349	0.69	+0.7
3,517,780	+		Psest_3349	0.69	+1.1
3,518,061	-				+0.9
3,518,067	+				+0.8
3,518,068	-				+0.4
3,518,068	-				+1.2
3,518,073	+				-2.9
3,518,073	+				-0.4
3,518,073	+				-1.8
3,518,073	+				-0.3
3,518,074	-				+0.8
3,518,074	-				-1.6
3,518,074	-				-0.5
3,518,074	-				-0.1
3,518,074	-				-0.0
3,518,074	-				-0.3
3,518,074	-				-0.2
3,518,074	-				+0.7
3,518,074	-				-0.5
3,518,074	-				-1.6
3,518,074	-				+0.0
3,518,074	-				-0.2
3,518,074	-				-0.5
3,518,074	-				-1.3
3,518,074	-				-0.2
3,518,074	-				+0.9
3,518,076	+				-1.2
3,518,076	+				-2.5
3,518,077	-				-0.6
3,518,077	-				-0.1
3,518,118	+				-2.2
3,518,118	+				-2.3
3,518,119	-				+0.3
3,518,130	+				-0.3
3,518,131	-				-1.3
3,518,190	+		Psest_3350	0.11	-2.3
3,518,191	-		Psest_3350	0.11	-1.6
3,518,191	-		Psest_3350	0.11	+0.7
3,518,196	+		Psest_3350	0.11	-1.2
3,518,196	+		Psest_3350	0.11	-1.3
3,518,196	+		Psest_3350	0.11	-0.7
3,518,196	+		Psest_3350	0.11	-1.6
3,518,196	+		Psest_3350	0.11	-2.1
3,518,196	+		Psest_3350	0.11	-1.8
3,518,196	+		Psest_3350	0.11	-1.2
3,518,196	+		Psest_3350	0.11	-2.3
3,518,197	-		Psest_3350	0.11	+0.3
3,518,197	-		Psest_3350	0.11	-1.0
3,518,197	-		Psest_3350	0.11	+0.0
3,518,197	-		Psest_3350	0.11	-1.3
3,518,197	-		Psest_3350	0.11	+0.1
3,518,197	-		Psest_3350	0.11	-0.5
3,518,197	-		Psest_3350	0.11	-1.5
3,518,205	+		Psest_3350	0.12	-2.1
3,518,206	-		Psest_3350	0.12	+3.6
3,518,206	-		Psest_3350	0.12	-0.3
3,518,206	-		Psest_3350	0.12	+1.1
3,518,206	-		Psest_3350	0.12	+0.6
3,518,206	-		Psest_3350	0.12	-0.7
3,518,206	-		Psest_3350	0.12	+0.2
3,518,277	+		Psest_3350	0.18	-2.2
3,518,344	-		Psest_3350	0.24	-1.9
3,518,344	-		Psest_3350	0.24	-0.2
3,518,344	-		Psest_3350	0.24	-0.2
3,518,344	-		Psest_3350	0.24	-0.6
3,518,344	-		Psest_3350	0.24	-0.5
3,518,344	-		Psest_3350	0.24	-1.0
3,518,535	+		Psest_3350	0.40	-1.4
3,518,535	+		Psest_3350	0.40	-0.2
3,518,535	+		Psest_3350	0.40	-2.0
3,518,535	+		Psest_3350	0.40	-1.2
3,518,535	+		Psest_3350	0.40	-0.8
3,518,535	+		Psest_3350	0.40	+2.0
3,518,535	+		Psest_3350	0.40	-0.9
3,518,535	+		Psest_3350	0.40	-1.1
3,518,535	+		Psest_3350	0.40	-0.2
3,518,535	+		Psest_3350	0.40	-2.2
3,518,535	+		Psest_3350	0.40	-1.2
3,518,536	-		Psest_3350	0.40	-1.6
3,518,536	-		Psest_3350	0.40	-0.2
3,518,536	-		Psest_3350	0.40	-2.2
3,518,536	-		Psest_3350	0.40	+0.4
3,518,536	-		Psest_3350	0.40	-1.6
3,518,536	-		Psest_3350	0.40	-1.3
3,518,536	-		Psest_3350	0.40	-1.2
3,518,536	-		Psest_3350	0.40	-0.1
3,518,536	-		Psest_3350	0.40	-0.4
3,518,536	-		Psest_3350	0.40	+0.7
3,518,811	+		Psest_3350	0.64	-0.9
3,518,811	+		Psest_3350	0.64	-2.9
3,518,812	-		Psest_3350	0.64	+1.0
3,518,812	-		Psest_3350	0.64	-0.3
3,518,812	-		Psest_3350	0.64	-1.3
3,518,988	+		Psest_3350	0.79	-0.8
3,518,989	-		Psest_3350	0.79	-1.8
3,518,989	-		Psest_3350	0.79	-0.1
3,518,989	-		Psest_3350	0.79	-2.2
3,519,069	+		Psest_3350	0.86	-0.8
3,519,069	+		Psest_3350	0.86	-2.7
3,519,069	+		Psest_3350	0.86	-1.1
3,519,070	-		Psest_3350	0.86	-1.5
3,519,070	-		Psest_3350	0.86	-2.1
3,519,072	+		Psest_3350	0.86	-2.3
3,519,072	+		Psest_3350	0.86	-0.7
3,519,072	+		Psest_3350	0.86	-1.2
3,519,072	+		Psest_3350	0.86	+0.2
3,519,111	+		Psest_3350	0.90	-1.7
3,519,207	+				-2.3
3,519,207	+				-0.7
3,519,207	+				-0.4
3,519,207	+				-1.6
3,519,207	+				-0.6
3,519,207	+				+0.4
3,519,207	+				-0.6
3,519,207	+				-1.2
3,519,208	-				-1.5
3,519,329	+				-3.0
3,519,330	-				-1.9
3,519,330	-				+0.5
3,519,380	-				-1.3
3,519,429	+				-3.0
3,519,446	+				-1.8
3,519,446	+				-1.0
3,519,446	+				-1.3
3,519,446	+				-1.6
3,519,447	-				+0.9
3,519,447	-				+0.6
3,519,447	-				+0.3
3,519,447	-				+1.3
3,519,447	-				+0.3
3,519,447	-				-1.3
3,519,609	+				-0.4
3,519,927	+		Psest_3351	0.18	-1.9
3,519,927	+		Psest_3351	0.18	-2.3
3,519,928	-		Psest_3351	0.18	-0.6
3,520,049	+		Psest_3351	0.26	-1.2
3,520,177	-		Psest_3351	0.34	-3.2
3,520,177	-		Psest_3351	0.34	-0.6
3,520,194	+		Psest_3351	0.35	-0.8
3,520,194	+		Psest_3351	0.35	-0.3
3,520,194	+		Psest_3351	0.35	-0.7
3,520,195	-		Psest_3351	0.35	-0.5
3,520,195	-		Psest_3351	0.35	-0.7
3,520,206	+		Psest_3351	0.36	-2.4