Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3341

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,504,723	-				+0.9
3,504,928	+		Psest_3340	0.22	+0.8
3,504,928	+		Psest_3340	0.22	+0.6
3,504,929	-		Psest_3340	0.22	-0.2
3,504,929	-		Psest_3340	0.22	+0.5
3,505,054	+		Psest_3340	0.40	+1.4
3,505,063	+		Psest_3340	0.41	+0.4
3,505,188	+		Psest_3340	0.59	+1.0
3,505,192	+		Psest_3340	0.60	-1.2
3,505,192	+		Psest_3340	0.60	+1.5
3,505,192	+		Psest_3340	0.60	-0.2
3,505,192	+		Psest_3340	0.60	-0.8
3,505,192	+		Psest_3340	0.60	+0.2
3,505,192	+		Psest_3340	0.60	-0.5
3,505,192	+		Psest_3340	0.60	+0.8
3,505,192	+		Psest_3340	0.60	-0.1
3,505,193	-		Psest_3340	0.60	+0.0
3,505,193	-		Psest_3340	0.60	-1.1
3,505,193	-		Psest_3340	0.60	-1.2
3,505,193	-		Psest_3340	0.60	-2.0
3,505,193	-		Psest_3340	0.60	+2.1
3,505,193	-		Psest_3340	0.60	-0.5
3,505,193	-		Psest_3340	0.60	-0.7
3,505,193	-		Psest_3340	0.60	+1.2
3,505,193	-		Psest_3340	0.60	-0.6
3,505,193	-		Psest_3340	0.60	-0.4
3,505,309	+		Psest_3340	0.76	+0.2
3,505,326	-		Psest_3340	0.79	-0.6
3,505,326	-		Psest_3340	0.79	-0.3
3,505,504	+				-0.4
3,505,504	+				-1.9
3,505,504	+				-0.6
3,505,504	+				-1.2
3,505,504	+				-1.3
3,505,504	+				+0.8
3,505,505	-				+0.1
3,505,508	+				-2.2
3,505,509	-				-1.8
3,505,509	-				+1.5
3,505,509	-				+0.8
3,505,509	-				-0.8
3,505,509	-				-1.5
3,505,509	-				-0.6
3,505,509	-				+1.4
3,505,509	-				-0.6
3,505,517	-				-2.4
3,505,537	-				+0.1
3,505,548	-				+0.1
3,505,642	+				-1.0
3,505,642	+				-0.6
3,505,642	+				-1.3
3,505,643	-				-1.4
3,505,643	-				-1.4
3,505,661	+				+0.7
3,505,662	-				-0.6
3,505,846	-				+0.0
3,505,846	-				+0.0
3,505,847	+				+0.2
3,505,848	-				-0.1
3,505,953	+		Psest_3341	0.13	-0.8
3,505,953	+		Psest_3341	0.13	+0.2
3,505,954	-		Psest_3341	0.13	-1.9
3,505,954	-		Psest_3341	0.13	-0.6
3,506,040	-		Psest_3341	0.17	-0.0
3,506,040	-		Psest_3341	0.17	-1.4
3,506,098	+		Psest_3341	0.20	-0.6
3,506,099	-		Psest_3341	0.20	-1.6
3,506,132	+		Psest_3341	0.21	-0.8
3,506,208	+		Psest_3341	0.25	-0.8
3,506,233	+		Psest_3341	0.26	-0.0
3,506,233	+		Psest_3341	0.26	-1.7
3,506,233	+		Psest_3341	0.26	-1.0
3,506,233	+		Psest_3341	0.26	+0.3
3,506,233	+		Psest_3341	0.26	-0.1
3,506,233	+		Psest_3341	0.26	-1.1
3,506,233	+		Psest_3341	0.26	-1.9
3,506,233	+		Psest_3341	0.26	-0.3
3,506,233	+		Psest_3341	0.26	-2.1
3,506,233	+		Psest_3341	0.26	-1.6
3,506,233	+		Psest_3341	0.26	+0.1
3,506,233	+		Psest_3341	0.26	+0.8
3,506,234	-		Psest_3341	0.26	-1.4
3,506,234	-		Psest_3341	0.26	+0.8
3,506,234	-		Psest_3341	0.26	-1.9
3,506,234	-		Psest_3341	0.26	-2.2
3,506,234	-		Psest_3341	0.26	-0.7
3,506,234	-		Psest_3341	0.26	+0.4
3,506,234	-		Psest_3341	0.26	-0.4
3,506,234	-		Psest_3341	0.26	+0.3
3,506,234	-		Psest_3341	0.26	+1.0
3,506,234	-		Psest_3341	0.26	-0.8
3,506,234	-		Psest_3341	0.26	-1.7
3,506,234	-		Psest_3341	0.26	+0.3
3,506,234	-		Psest_3341	0.26	-0.9
3,506,234	-		Psest_3341	0.26	+1.0
3,506,234	-		Psest_3341	0.26	-2.1
3,506,234	-		Psest_3341	0.26	-0.1
3,506,234	-		Psest_3341	0.26	+0.0
3,506,234	-		Psest_3341	0.26	-1.1
3,506,234	-		Psest_3341	0.26	-0.6
3,506,234	-		Psest_3341	0.26	+0.6
3,506,234	-		Psest_3341	0.26	-1.3
3,506,234	-		Psest_3341	0.26	-0.3
3,506,234	-		Psest_3341	0.26	-1.1
3,506,234	-		Psest_3341	0.26	-1.1
3,506,234	-		Psest_3341	0.26	-0.3
3,506,234	-		Psest_3341	0.26	-0.7
3,506,234	-		Psest_3341	0.26	+1.1
3,506,234	-		Psest_3341	0.26	-0.4
3,506,234	-		Psest_3341	0.26	+0.6
3,506,235	+		Psest_3341	0.26	+0.7
3,506,235	+		Psest_3341	0.26	-0.3
3,506,235	+		Psest_3341	0.26	+2.0
3,506,236	-		Psest_3341	0.26	+0.0
3,506,236	-		Psest_3341	0.26	-1.6
3,506,258	+		Psest_3341	0.27	-0.9
3,506,259	-		Psest_3341	0.27	+0.1
3,506,259	-		Psest_3341	0.27	-1.6
3,506,292	+		Psest_3341	0.28	-0.9
3,506,292	+		Psest_3341	0.28	-0.7
3,506,293	-		Psest_3341	0.29	-0.2
3,506,293	-		Psest_3341	0.29	-0.3
3,506,314	+		Psest_3341	0.29	-0.0
3,506,314	+		Psest_3341	0.29	+0.0
3,506,314	+		Psest_3341	0.29	-0.5
3,506,315	-		Psest_3341	0.30	-0.2
3,506,339	+		Psest_3341	0.31	-1.7
3,506,458	-		Psest_3341	0.36	-0.6
3,506,458	-		Psest_3341	0.36	+1.1
3,506,479	+		Psest_3341	0.37	-0.9
3,506,480	-		Psest_3341	0.37	-1.6
3,506,496	-		Psest_3341	0.38	-0.3
3,506,598	-		Psest_3341	0.42	+0.9
3,506,672	+		Psest_3341	0.46	-1.8
3,506,703	+		Psest_3341	0.47	+0.3
3,506,704	-		Psest_3341	0.47	-1.2
3,506,704	-		Psest_3341	0.47	+1.5
3,506,704	-		Psest_3341	0.47	-0.1
3,506,704	-		Psest_3341	0.47	+0.0
3,506,811	-		Psest_3341	0.52	-0.6
3,506,826	+		Psest_3341	0.52	+1.3
3,506,949	+		Psest_3341	0.58	-1.7
3,506,994	+		Psest_3341	0.60	-2.2
3,507,009	-		Psest_3341	0.61	+0.3
3,507,139	+		Psest_3341	0.66	-0.3
3,507,139	+		Psest_3341	0.66	-2.2
3,507,140	-		Psest_3341	0.66	-1.0
3,507,140	-		Psest_3341	0.66	-0.0
3,507,140	-		Psest_3341	0.66	-0.3
3,507,177	+		Psest_3341	0.68	-0.1
3,507,428	+		Psest_3341	0.79	-1.0
3,507,435	+		Psest_3341	0.80	-0.8
3,507,435	+		Psest_3341	0.80	+0.7
3,507,435	+		Psest_3341	0.80	-0.1
3,507,435	+		Psest_3341	0.80	-1.0
3,507,435	+		Psest_3341	0.80	+0.3
3,507,435	+		Psest_3341	0.80	-1.4
3,507,436	-		Psest_3341	0.80	-1.9
3,507,442	-		Psest_3341	0.80	+0.3
3,507,442	-		Psest_3341	0.80	-0.4
3,507,636	+		Psest_3341	0.89	+0.4
3,507,636	+		Psest_3341	0.89	-0.7
3,507,637	-		Psest_3341	0.89	+0.4
3,507,637	-		Psest_3341	0.89	-0.6
3,507,637	-		Psest_3341	0.89	-1.0
3,507,637	-		Psest_3341	0.89	+0.7
3,507,637	-		Psest_3341	0.89	-0.2
3,507,637	-		Psest_3341	0.89	-0.9
3,507,637	-		Psest_3341	0.89	-0.4
3,507,692	+				+0.5
3,507,692	+				+0.1
3,507,693	-				-0.7
3,507,693	-				-0.8
3,507,693	-				-0.2
3,507,729	+				+0.6
3,507,729	+				+0.4
3,507,729	+				+1.7
3,507,729	+				+0.0
3,507,729	+				+2.3
3,507,730	-				-0.7
3,507,730	-				-0.6
3,507,730	-				+0.8
3,507,730	-				+1.0
3,507,730	-				+0.0
3,507,730	-				+0.1
3,507,730	-				-0.0
3,507,730	-				-0.5
3,507,730	-				+0.5
3,507,730	-				+0.5
3,507,765	+				+0.8
3,507,765	+				+2.0
3,507,765	+				-0.7
3,507,765	+				-0.2
3,507,765	+				+1.1
3,507,765	+				+1.6
3,507,765	+				+1.1
3,507,765	+				+1.0
3,507,765	+				+0.0
3,507,765	+				+2.0
3,507,765	+				+2.0
3,507,765	+				+1.3
3,507,765	+				+1.3
3,507,766	-				-1.1
3,507,766	-				-0.0
3,507,766	-				-1.4
3,507,766	-				+0.0
3,507,766	-				+1.3
3,507,766	-				+0.2
3,507,766	-				-0.4
3,507,766	-				+1.4
3,507,766	-				-0.4
3,507,766	-				-0.2
3,507,768	+				+0.4
3,507,768	+				+0.5
3,507,768	+				+0.5
3,507,768	+				+0.8
3,507,768	+				+1.1
3,507,769	-				-0.4
3,507,769	-				+0.4
3,507,769	-				-0.0
3,507,769	-				-0.3
3,507,769	-				-0.1
3,507,769	-				-0.8
3,507,769	-				+0.5
3,507,807	+				+1.0
3,507,807	+				+1.4
3,507,807	+				-0.0
3,507,808	-				+0.3
3,507,808	-				+1.3
3,507,808	-				+1.2
3,507,808	-				+0.2
3,507,808	-				+1.1
3,507,808	-				-0.2
3,507,831	-				+1.6
3,507,885	+				+0.7
3,507,885	+				+1.2
3,507,894	-				+0.2
3,507,899	+				+0.6
3,507,900	-				+0.2
3,507,900	-				-0.6
3,507,900	-				-0.8
3,507,900	-				+1.2
3,507,949	+				-1.2
3,507,950	-				+0.0
3,507,950	-				-0.7
3,507,950	-				+0.3
3,507,950	-				-0.2
3,507,969	-				+1.5
3,507,969	-				-0.3
3,508,227	+		Psest_3342	0.30	-0.3
3,508,227	+		Psest_3342	0.30	+0.2
3,508,227	+		Psest_3342	0.30	-0.0
3,508,228	-		Psest_3342	0.30	-0.3
3,508,228	-		Psest_3342	0.30	-0.0
3,508,228	-		Psest_3342	0.30	-0.4
3,508,228	-		Psest_3342	0.30	+0.0
3,508,228	-		Psest_3342	0.30	+0.1
3,508,340	+		Psest_3342	0.49	-1.0
3,508,340	+		Psest_3342	0.49	-2.0
3,508,341	-		Psest_3342	0.49	-0.7
3,508,341	-		Psest_3342	0.49	+0.3
3,508,341	-		Psest_3342	0.49	-0.3
3,508,341	-		Psest_3342	0.49	+0.3
3,508,341	-		Psest_3342	0.49	+0.1
3,508,341	-		Psest_3342	0.49	+1.0
3,508,341	-		Psest_3342	0.49	+0.0
3,508,410	-		Psest_3342	0.61	+0.0
3,508,410	-		Psest_3342	0.61	-0.1
3,508,440	-		Psest_3342	0.66	+1.0
3,508,577	-		Psest_3342	0.89	+0.1
3,508,577	-		Psest_3342	0.89	+0.8
3,508,605	+				+1.4
3,508,605	+				-0.5
3,508,606	-				-0.3
3,508,657	+				+0.6
3,508,701	-				-2.1
3,508,766	+		Psest_3343	0.22	+0.5
3,508,766	+		Psest_3343	0.22	-1.6
3,508,767	-		Psest_3343	0.23	+0.2
3,508,767	-		Psest_3343	0.23	+1.7
3,508,767	-		Psest_3343	0.23	-0.8
3,508,767	-		Psest_3343	0.23	-0.2
3,508,767	-		Psest_3343	0.23	-0.5
3,508,767	-		Psest_3343	0.23	+1.3
3,508,826	+		Psest_3343	0.34	+1.2