Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32250

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,380,725	-		PGA1_c32240	0.22	-0.9
3,380,751	+		PGA1_c32240	0.24	+0.9
3,380,760	+		PGA1_c32240	0.24	+0.3
3,380,760	+		PGA1_c32240	0.24	+0.4
3,380,862	+		PGA1_c32240	0.33	-0.0
3,380,894	+		PGA1_c32240	0.35	-1.6
3,380,902	-		PGA1_c32240	0.36	-0.3
3,381,037	+		PGA1_c32240	0.46	-1.4
3,381,040	-		PGA1_c32240	0.47	+0.5
3,381,066	+		PGA1_c32240	0.49	-0.6
3,381,066	+		PGA1_c32240	0.49	+0.5
3,381,066	+		PGA1_c32240	0.49	+0.9
3,381,081	+		PGA1_c32240	0.50	-0.5
3,381,089	-		PGA1_c32240	0.51	+0.7
3,381,134	-		PGA1_c32240	0.54	+1.2
3,381,153	-		PGA1_c32240	0.56	+1.0
3,381,188	+		PGA1_c32240	0.58	+3.1
3,381,209	+		PGA1_c32240	0.60	-0.7
3,381,304	+		PGA1_c32240	0.68	-0.2
3,381,312	-		PGA1_c32240	0.68	-1.5
3,381,312	-		PGA1_c32240	0.68	-2.0
3,381,312	-		PGA1_c32240	0.68	+0.3
3,381,428	-		PGA1_c32240	0.77	-0.5
3,381,447	-		PGA1_c32240	0.79	-2.2
3,381,493	+		PGA1_c32240	0.83	-1.7
3,381,493	+		PGA1_c32240	0.83	-2.2
3,381,508	+		PGA1_c32240	0.84	-1.1
3,381,508	+		PGA1_c32240	0.84	-1.6
3,381,516	-		PGA1_c32240	0.84	-0.2
3,381,516	-		PGA1_c32240	0.84	-0.2
3,381,516	-		PGA1_c32240	0.84	-0.9
3,381,516	-		PGA1_c32240	0.84	-0.3
3,381,523	+		PGA1_c32240	0.85	-1.4
3,381,616	-				+1.5
3,381,616	-				-3.0
3,381,616	-				+0.4
3,381,635	-				-0.8
3,381,706	+				-0.6
3,381,719	+				-1.4
3,381,719	+				-0.2
3,381,719	-				+0.1
3,381,727	-				-0.3
3,381,727	-				+0.5
3,381,727	-				-0.0
3,381,818	-				-0.4
3,381,845	+				-0.3
3,381,845	-				-0.7
3,381,874	-		PGA1_c32250	0.10	+0.4
3,381,883	-		PGA1_c32250	0.11	-1.1
3,381,911	-		PGA1_c32250	0.13	-0.3
3,381,924	+		PGA1_c32250	0.14	+0.1
3,381,931	+		PGA1_c32250	0.14	-2.6
3,381,931	+		PGA1_c32250	0.14	-1.9
3,381,931	+		PGA1_c32250	0.14	-1.2
3,381,940	-		PGA1_c32250	0.15	-0.2
3,381,955	+		PGA1_c32250	0.16	-0.7
3,381,982	-		PGA1_c32250	0.18	-2.5
3,381,996	+		PGA1_c32250	0.19	-0.5
3,382,053	+		PGA1_c32250	0.22	-0.0
3,382,068	+		PGA1_c32250	0.23	-0.2
3,382,124	+		PGA1_c32250	0.27	-0.0
3,382,124	+		PGA1_c32250	0.27	+0.1
3,382,127	-		PGA1_c32250	0.27	+2.6
3,382,132	-		PGA1_c32250	0.28	-1.3
3,382,239	-		PGA1_c32250	0.35	+0.2
3,382,241	+		PGA1_c32250	0.35	+0.1
3,382,241	+		PGA1_c32250	0.35	-0.7
3,382,274	+		PGA1_c32250	0.37	-1.3
3,382,307	+		PGA1_c32250	0.39	+0.2
3,382,307	+		PGA1_c32250	0.39	-0.8
3,382,312	+		PGA1_c32250	0.40	-1.2
3,382,312	+		PGA1_c32250	0.40	-3.0
3,382,312	+		PGA1_c32250	0.40	-0.6
3,382,315	-		PGA1_c32250	0.40	-0.1
3,382,315	-		PGA1_c32250	0.40	-2.0
3,382,315	-		PGA1_c32250	0.40	-0.1
3,382,315	-		PGA1_c32250	0.40	-1.0
3,382,320	-		PGA1_c32250	0.40	-1.1
3,382,320	-		PGA1_c32250	0.40	+0.8
3,382,320	-		PGA1_c32250	0.40	-2.3
3,382,413	+		PGA1_c32250	0.47	-0.6
3,382,413	+		PGA1_c32250	0.47	-0.4
3,382,413	+		PGA1_c32250	0.47	+0.3
3,382,421	-		PGA1_c32250	0.47	-0.4
3,382,421	-		PGA1_c32250	0.47	+0.3
3,382,421	-		PGA1_c32250	0.47	-0.7
3,382,451	-		PGA1_c32250	0.49	+0.4
3,382,455	+		PGA1_c32250	0.49	+0.4
3,382,476	+		PGA1_c32250	0.51	-1.5
3,382,479	-		PGA1_c32250	0.51	-0.1
3,382,479	-		PGA1_c32250	0.51	-0.1
3,382,484	-		PGA1_c32250	0.51	-0.3
3,382,639	-		PGA1_c32250	0.62	-1.0
3,382,655	+		PGA1_c32250	0.63	+0.7
3,382,663	-		PGA1_c32250	0.63	-0.4
3,382,731	-		PGA1_c32250	0.68	+0.2
3,382,749	-		PGA1_c32250	0.69	-0.6
3,382,780	+		PGA1_c32250	0.71	+0.1
3,382,918	-		PGA1_c32250	0.81	-1.8
3,382,938	+		PGA1_c32250	0.82	-0.0
3,383,043	-		PGA1_c32250	0.89	-0.2
3,383,043	-		PGA1_c32250	0.89	-0.0
3,383,123	-				-1.0
3,383,138	-				-0.4
3,383,170	-				-0.5
3,383,208	+				-0.3
3,383,208	+				-0.0
3,383,273	+				-0.0
3,383,324	+				-0.8
3,383,347	+				-0.1
3,383,355	-				+1.0
3,383,380	+		PGA1_c32260	0.11	-0.2
3,383,399	+		PGA1_c32260	0.12	+0.5
3,383,416	+		PGA1_c32260	0.14	+0.4
3,383,416	+		PGA1_c32260	0.14	-1.2
3,383,417	-		PGA1_c32260	0.14	-0.5
3,383,429	-		PGA1_c32260	0.14	+1.0
3,383,447	+		PGA1_c32260	0.16	-0.3
3,383,448	+		PGA1_c32260	0.16	-0.8
3,383,448	+		PGA1_c32260	0.16	-0.1
3,383,456	-		PGA1_c32260	0.16	-0.2
3,383,485	-		PGA1_c32260	0.18	-0.0
3,383,485	-		PGA1_c32260	0.18	+0.2
3,383,485	-		PGA1_c32260	0.18	+0.9
3,383,486	-		PGA1_c32260	0.18	-0.1
3,383,496	+		PGA1_c32260	0.19	-0.2
3,383,552	+		PGA1_c32260	0.22	-1.8
3,383,563	+		PGA1_c32260	0.23	-0.1
3,383,603	+		PGA1_c32260	0.26	+0.4
3,383,662	-		PGA1_c32260	0.30	-0.0
3,383,668	+		PGA1_c32260	0.30	+1.2
3,383,668	+		PGA1_c32260	0.30	+0.2
3,383,676	-		PGA1_c32260	0.31	+0.1
3,383,699	+		PGA1_c32260	0.32	-0.3
3,383,699	+		PGA1_c32260	0.32	-1.1
3,383,699	+		PGA1_c32260	0.32	-1.2
3,383,699	+		PGA1_c32260	0.32	-0.7
3,383,705	+		PGA1_c32260	0.33	-1.3
3,383,707	-		PGA1_c32260	0.33	-0.1
3,383,707	-		PGA1_c32260	0.33	-1.4
3,383,707	-		PGA1_c32260	0.33	-0.7
3,383,710	+		PGA1_c32260	0.33	+0.8
3,383,717	-		PGA1_c32260	0.33	-1.3
3,383,749	-		PGA1_c32260	0.35	+0.5
3,383,751	+		PGA1_c32260	0.36	-0.9
3,383,770	+		PGA1_c32260	0.37	+0.3
3,383,833	-		PGA1_c32260	0.41	+0.8
3,383,843	-		PGA1_c32260	0.42	-1.1
3,383,898	+		PGA1_c32260	0.45	+0.7
3,383,927	+		PGA1_c32260	0.47	-0.5
3,383,930	-		PGA1_c32260	0.47	-0.6
3,383,947	+		PGA1_c32260	0.48	-0.2
3,384,011	+		PGA1_c32260	0.53	+0.6
3,384,016	+		PGA1_c32260	0.53	-0.0
3,384,019	-		PGA1_c32260	0.53	-0.2
3,384,054	+		PGA1_c32260	0.56	-0.3
3,384,060	-		PGA1_c32260	0.56	-1.0
3,384,064	+		PGA1_c32260	0.56	+0.4
3,384,101	+		PGA1_c32260	0.59	+0.7
3,384,109	-		PGA1_c32260	0.59	+0.1
3,384,143	-		PGA1_c32260	0.61	+2.0
3,384,157	+		PGA1_c32260	0.62	+1.7
3,384,157	+		PGA1_c32260	0.62	+0.7
3,384,157	+		PGA1_c32260	0.62	+0.6
3,384,165	-		PGA1_c32260	0.63	+0.1
3,384,167	+		PGA1_c32260	0.63	+0.4
3,384,167	+		PGA1_c32260	0.63	+0.5
3,384,167	+		PGA1_c32260	0.63	-0.2
3,384,167	+		PGA1_c32260	0.63	-0.5
3,384,167	+		PGA1_c32260	0.63	+0.7
3,384,167	+		PGA1_c32260	0.63	-0.3
3,384,167	+		PGA1_c32260	0.63	+0.7
3,384,167	+		PGA1_c32260	0.63	-2.6
3,384,167	+		PGA1_c32260	0.63	-1.3
3,384,167	+		PGA1_c32260	0.63	+0.6
3,384,167	+		PGA1_c32260	0.63	-0.6
3,384,167	+		PGA1_c32260	0.63	+0.3
3,384,167	+		PGA1_c32260	0.63	-2.3
3,384,167	+		PGA1_c32260	0.63	+0.4
3,384,167	+		PGA1_c32260	0.63	+1.8
3,384,169	+		PGA1_c32260	0.63	-1.1
3,384,169	+		PGA1_c32260	0.63	-0.8
3,384,169	+		PGA1_c32260	0.63	+0.5
3,384,172	-		PGA1_c32260	0.63	-1.4
3,384,175	-		PGA1_c32260	0.64	-0.8
3,384,175	-		PGA1_c32260	0.64	-0.1
3,384,175	-		PGA1_c32260	0.64	-1.1
3,384,175	-		PGA1_c32260	0.64	+1.0
3,384,175	-		PGA1_c32260	0.64	+0.2
3,384,175	-		PGA1_c32260	0.64	+0.2
3,384,175	-		PGA1_c32260	0.64	+0.4
3,384,175	-		PGA1_c32260	0.64	-0.3
3,384,175	-		PGA1_c32260	0.64	-0.6
3,384,175	-		PGA1_c32260	0.64	-1.6
3,384,175	-		PGA1_c32260	0.64	-0.0
3,384,175	-		PGA1_c32260	0.64	+0.4
3,384,175	-		PGA1_c32260	0.64	-0.2
3,384,177	-		PGA1_c32260	0.64	-0.0
3,384,177	-		PGA1_c32260	0.64	-0.5
3,384,177	-		PGA1_c32260	0.64	-0.6
3,384,188	+		PGA1_c32260	0.64	+0.4