Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30230

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,160,197	-		PGA1_c30220	0.34	-1.2
3,160,264	-		PGA1_c30220	0.41	-0.1
3,160,274	-		PGA1_c30220	0.42	-0.4
3,160,300	-		PGA1_c30220	0.44	-2.6
3,160,311	+		PGA1_c30220	0.45	-0.1
3,160,329	-		PGA1_c30220	0.47	+0.6
3,160,389	-		PGA1_c30220	0.53	-1.6
3,160,408	-		PGA1_c30220	0.55	-0.1
3,160,432	-		PGA1_c30220	0.57	+0.0
3,160,453	-		PGA1_c30220	0.59	+0.7
3,160,453	-		PGA1_c30220	0.59	+0.8
3,160,502	-		PGA1_c30220	0.64	+1.4
3,160,502	-		PGA1_c30220	0.64	-3.1
3,160,522	+		PGA1_c30220	0.66	-0.1
3,160,568	-		PGA1_c30220	0.71	+0.3
3,160,573	-		PGA1_c30220	0.71	-0.5
3,160,584	+		PGA1_c30220	0.72	+0.5
3,160,586	+		PGA1_c30220	0.73	-0.0
3,160,602	-		PGA1_c30220	0.74	+0.2
3,160,646	+		PGA1_c30220	0.79	+0.3
3,160,657	+		PGA1_c30220	0.80	-0.0
3,160,701	+		PGA1_c30220	0.84	-1.3
3,160,741	-		PGA1_c30220	0.88	-0.8
3,160,746	+		PGA1_c30220	0.89	-0.3
3,160,746	+		PGA1_c30220	0.89	-0.3
3,160,754	-		PGA1_c30220	0.89	-1.2
3,160,754	-		PGA1_c30220	0.89	-0.5
3,160,816	+				-1.5
3,160,816	+				+0.4
3,160,816	+				+0.1
3,160,824	-				+0.1
3,160,848	-				+1.2
3,160,862	-				-0.0
3,160,888	+				-0.0
3,160,896	-				-1.3
3,160,912	+				+0.2
3,160,912	+				+0.2
3,160,912	+				+0.6
3,160,912	+				-0.2
3,160,912	+				-0.0
3,160,920	-				-1.7
3,160,920	-				-0.5
3,160,920	-				-3.7
3,160,920	-				-1.1
3,160,920	-				-3.0
3,160,920	-				-1.6
3,160,927	+				-2.0
3,160,931	-				-1.0
3,160,935	+				+1.4
3,160,935	-				-1.2
3,160,954	+				+0.1
3,160,962	-				+1.2
3,160,962	-				-1.3
3,160,962	-				-1.1
3,160,970	+				-0.1
3,160,970	+				-1.9
3,160,983	-				+1.3
3,160,994	+				-0.3
3,160,994	+				-0.6
3,160,994	+				-0.2
3,160,994	+				-0.6
3,160,994	+				+0.8
3,160,994	+				+0.5
3,161,002	-				-1.4
3,161,008	+				-2.0
3,161,024	-				+0.7
3,161,032	-				-1.0
3,161,032	-				-0.9
3,161,032	-				-2.0
3,161,037	+				+0.8
3,161,037	+				+0.1
3,161,066	+				-1.5
3,161,074	-				-0.2
3,161,088	-				+1.1
3,161,089	+				+0.2
3,161,089	+				-1.0
3,161,097	-				-1.1
3,161,097	-				-1.2
3,161,097	-				-1.6
3,161,137	+				-0.5
3,161,151	-				-1.8
3,161,157	+				-2.7
3,161,164	-				+0.1
3,161,165	-				-3.6
3,161,180	+				+0.3
3,161,181	+				-1.9
3,161,181	+				-0.4
3,161,188	-				-0.9
3,161,189	-				-1.7
3,161,189	-				-0.7
3,161,189	-				-1.0
3,161,189	-				-0.3
3,161,189	-				+2.5
3,161,189	-				+1.0
3,161,192	+				-1.5
3,161,192	+				-1.9
3,161,192	+				-2.2
3,161,193	-				-4.0
3,161,194	-				+0.5
3,161,200	-				-0.3
3,161,206	+				+1.0
3,161,206	+				-0.8
3,161,206	+				+0.3
3,161,208	-				-1.6
3,161,214	-				+0.7
3,161,214	-				-0.9
3,161,214	-				-1.0
3,161,214	-				+0.6
3,161,214	-				-0.4
3,161,214	-				-0.9
3,161,240	-				-1.0
3,161,249	+				-1.1
3,161,257	-				+0.3
3,161,281	+				-2.0
3,161,297	+				-0.4
3,161,297	+				-0.4
3,161,297	+				-0.0
3,161,324	+				-1.0
3,161,343	-				+0.2
3,161,368	+		PGA1_c30230	0.10	-3.1
3,161,369	+		PGA1_c30230	0.10	-0.6
3,161,377	-		PGA1_c30230	0.11	-1.6
3,161,426	-		PGA1_c30230	0.13	-1.6
3,161,433	-		PGA1_c30230	0.14	-2.4
3,161,442	-		PGA1_c30230	0.14	-1.8
3,161,460	+		PGA1_c30230	0.15	-0.6
3,161,460	+		PGA1_c30230	0.15	-1.2
3,161,460	+		PGA1_c30230	0.15	-1.9
3,161,460	+		PGA1_c30230	0.15	+0.1
3,161,460	+		PGA1_c30230	0.15	-1.9
3,161,460	+		PGA1_c30230	0.15	-0.2
3,161,460	+		PGA1_c30230	0.15	-2.6
3,161,460	+		PGA1_c30230	0.15	-1.2
3,161,460	+		PGA1_c30230	0.15	-1.7
3,161,468	-		PGA1_c30230	0.16	-1.6
3,161,468	-		PGA1_c30230	0.16	-1.4
3,161,475	+		PGA1_c30230	0.16	-2.2
3,161,475	+		PGA1_c30230	0.16	+0.1
3,161,483	+		PGA1_c30230	0.17	-2.9
3,161,483	-		PGA1_c30230	0.17	-3.1
3,161,483	-		PGA1_c30230	0.17	-1.3
3,161,530	-		PGA1_c30230	0.19	-2.0
3,161,548	-		PGA1_c30230	0.20	+0.4
3,161,556	+		PGA1_c30230	0.20	-1.0
3,161,568	+		PGA1_c30230	0.21	-2.3
3,161,576	-		PGA1_c30230	0.21	+0.1
3,161,590	-		PGA1_c30230	0.22	-1.8
3,161,594	+		PGA1_c30230	0.22	-2.7
3,161,594	+		PGA1_c30230	0.22	-0.6
3,161,639	+		PGA1_c30230	0.25	-1.2
3,161,647	-		PGA1_c30230	0.25	-1.8
3,161,647	-		PGA1_c30230	0.25	-1.0
3,161,650	+		PGA1_c30230	0.25	-0.3
3,161,658	-		PGA1_c30230	0.26	-0.5
3,161,666	-		PGA1_c30230	0.26	-0.2
3,161,670	+		PGA1_c30230	0.26	-0.3
3,161,675	+		PGA1_c30230	0.27	-0.5
3,161,675	+		PGA1_c30230	0.27	-0.9
3,161,680	+		PGA1_c30230	0.27	-3.0
3,161,680	+		PGA1_c30230	0.27	-1.9
3,161,683	-		PGA1_c30230	0.27	-0.1
3,161,688	-		PGA1_c30230	0.27	+0.3
3,161,688	-		PGA1_c30230	0.27	-0.3
3,161,688	-		PGA1_c30230	0.27	+0.1
3,161,734	-		PGA1_c30230	0.30	+0.6
3,161,748	+		PGA1_c30230	0.31	-1.0
3,161,755	+		PGA1_c30230	0.31	-1.6
3,161,783	+		PGA1_c30230	0.33	-0.6
3,161,791	-		PGA1_c30230	0.33	+0.5
3,161,824	-		PGA1_c30230	0.35	-1.5
3,161,860	-		PGA1_c30230	0.37	-0.2
3,161,902	+		PGA1_c30230	0.39	-0.8
3,161,991	+		PGA1_c30230	0.44	-2.2
3,161,991	+		PGA1_c30230	0.44	-1.8
3,161,991	+		PGA1_c30230	0.44	-2.4
3,161,999	-		PGA1_c30230	0.44	-0.7
3,162,044	+		PGA1_c30230	0.46	-0.9
3,162,044	+		PGA1_c30230	0.46	-0.8
3,162,049	+		PGA1_c30230	0.47	-2.0
3,162,049	+		PGA1_c30230	0.47	-1.2
3,162,057	-		PGA1_c30230	0.47	-2.3
3,162,060	+		PGA1_c30230	0.47	-2.5
3,162,060	+		PGA1_c30230	0.47	+1.0
3,162,060	+		PGA1_c30230	0.47	+0.5
3,162,060	+		PGA1_c30230	0.47	+0.1
3,162,060	+		PGA1_c30230	0.47	-0.6
3,162,060	+		PGA1_c30230	0.47	-1.7
3,162,068	-		PGA1_c30230	0.48	-1.3
3,162,068	-		PGA1_c30230	0.48	-1.6
3,162,068	-		PGA1_c30230	0.48	-1.1
3,162,068	-		PGA1_c30230	0.48	-0.2
3,162,083	-		PGA1_c30230	0.49	-2.0
3,162,093	-		PGA1_c30230	0.49	-2.9
3,162,201	-		PGA1_c30230	0.55	-2.9
3,162,318	-		PGA1_c30230	0.61	-0.0
3,162,334	+		PGA1_c30230	0.62	-1.5
3,162,347	+		PGA1_c30230	0.63	+0.4
3,162,382	-		PGA1_c30230	0.65	-1.6
3,162,410	+		PGA1_c30230	0.66	-0.4
3,162,415	+		PGA1_c30230	0.66	-2.2
3,162,466	-		PGA1_c30230	0.69	-0.0
3,162,473	+		PGA1_c30230	0.69	-2.0
3,162,545	+		PGA1_c30230	0.73	-1.0
3,162,571	+		PGA1_c30230	0.75	-2.4
3,162,608	+		PGA1_c30230	0.77	-0.5
3,162,616	-		PGA1_c30230	0.77	-0.9
3,162,628	+		PGA1_c30230	0.78	-1.6
3,162,636	-		PGA1_c30230	0.78	+1.0
3,162,643	-		PGA1_c30230	0.78	-0.3
3,162,651	+		PGA1_c30230	0.79	-1.1
3,162,676	-		PGA1_c30230	0.80	-0.4
3,162,678	+		PGA1_c30230	0.80	-0.3
3,162,898	-				-1.6
3,162,898	-				-0.4
3,162,972	+				+0.1
3,162,993	+				-1.8
3,163,066	-				+0.0
3,163,098	+				+0.9
3,163,098	+				+1.0
3,163,106	-				-0.2
3,163,224	+				-0.4
3,163,224	+				-0.2
3,163,232	-				-0.3
3,163,431	-				+0.5
3,163,503	+				-2.6
3,163,608	-		PGA1_c30240	0.20	-1.2
3,163,608	-		PGA1_c30240	0.20	+0.8
3,163,739	-		PGA1_c30240	0.39	-0.2
3,163,752	+		PGA1_c30240	0.41	+1.1
3,163,771	-		PGA1_c30240	0.44	-1.4
3,163,783	+		PGA1_c30240	0.45	-0.9
3,163,783	+		PGA1_c30240	0.45	-0.0
3,163,791	-		PGA1_c30240	0.47	-0.0
3,163,809	+		PGA1_c30240	0.49	-0.9
3,163,809	+		PGA1_c30240	0.49	-1.4
3,163,809	+		PGA1_c30240	0.49	+1.5
3,163,809	+		PGA1_c30240	0.49	+0.3
3,163,809	+		PGA1_c30240	0.49	-0.4
3,163,809	+		PGA1_c30240	0.49	+0.1
3,163,840	+		PGA1_c30240	0.54	-2.7
3,163,840	+		PGA1_c30240	0.54	+0.2
3,163,863	+		PGA1_c30240	0.57	-0.2
3,163,863	+		PGA1_c30240	0.57	-1.7
3,163,871	-		PGA1_c30240	0.58	-0.9
3,163,871	-		PGA1_c30240	0.58	-0.3
3,163,912	+		PGA1_c30240	0.64	-0.6
3,163,922	+		PGA1_c30240	0.65	+0.5
3,163,955	+		PGA1_c30240	0.70	+0.8
3,163,955	+		PGA1_c30240	0.70	-1.6
3,163,999	+		PGA1_c30240	0.76	+0.0
3,163,999	+		PGA1_c30240	0.76	-0.5
3,163,999	+		PGA1_c30240	0.76	-0.4
3,163,999	+		PGA1_c30240	0.76	-1.5
3,163,999	+		PGA1_c30240	0.76	-0.5
3,163,999	+		PGA1_c30240	0.76	+1.3
3,163,999	+		PGA1_c30240	0.76	-0.5
3,163,999	+		PGA1_c30240	0.76	-0.7
3,163,999	+		PGA1_c30240	0.76	-0.4
3,164,007	-		PGA1_c30240	0.78	-1.0
3,164,007	-		PGA1_c30240	0.78	-1.5
3,164,007	-		PGA1_c30240	0.78	-0.3
3,164,007	-		PGA1_c30240	0.78	-2.9
3,164,007	-		PGA1_c30240	0.78	+0.4
3,164,007	-		PGA1_c30240	0.78	-1.4
3,164,007	-		PGA1_c30240	0.78	-0.6
3,164,007	-		PGA1_c30240	0.78	+0.7
3,164,017	-		PGA1_c30240	0.79	-0.2