Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30050

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c30030 and PGA1_c30040 are separated by 78 nucleotidesPGA1_c30040 and PGA1_c30050 are separated by 35 nucleotidesPGA1_c30050 and PGA1_c30060 are separated by 3 nucleotidesPGA1_c30060 and PGA1_c30070 overlap by 4 nucleotides PGA1_c30030: PGA1_c30030 - putative D-alanyl-D-alanine carboxypeptidase, at 3,138,763 to 3,140,352 _c30030 PGA1_c30040: PGA1_c30040 - cytochrome oxidase maturation protein CcoS, at 3,140,431 to 3,140,589 _c30040 PGA1_c30050: PGA1_c30050 - heavy metal translocating ATPase CcoI, at 3,140,625 to 3,142,805 _c30050 PGA1_c30060: PGA1_c30060 - protein CcoH, at 3,142,809 to 3,143,279 _c30060 PGA1_c30070: PGA1_c30070 - cytochrome c accessory protein CcoG, at 3,143,276 to 3,144,874 _c30070 Position (kb) 3140 3141 3142 3143Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3140.429 kb on + strandat 3140.484 kb on + strand, within PGA1_c30040at 3140.511 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.521 kb on + strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.529 kb on - strand, within PGA1_c30040at 3140.543 kb on - strand, within PGA1_c30040at 3140.589 kb on + strandat 3140.592 kb on - strandat 3140.602 kb on + strandat 3140.607 kb on + strandat 3140.676 kb on + strandat 3140.684 kb on - strandat 3140.716 kb on + strandat 3140.800 kb on - strandat 3140.803 kb on - strandat 3140.805 kb on - strandat 3140.894 kb on + strand, within PGA1_c30050at 3140.922 kb on + strand, within PGA1_c30050at 3140.949 kb on + strand, within PGA1_c30050at 3140.963 kb on - strand, within PGA1_c30050at 3141.078 kb on - strand, within PGA1_c30050at 3141.102 kb on + strand, within PGA1_c30050at 3141.108 kb on + strand, within PGA1_c30050at 3141.173 kb on - strand, within PGA1_c30050at 3141.217 kb on + strand, within PGA1_c30050at 3141.225 kb on - strand, within PGA1_c30050at 3141.245 kb on - strand, within PGA1_c30050at 3141.324 kb on - strand, within PGA1_c30050at 3141.332 kb on + strand, within PGA1_c30050at 3141.368 kb on + strand, within PGA1_c30050at 3141.412 kb on + strand, within PGA1_c30050at 3141.420 kb on - strand, within PGA1_c30050at 3141.448 kb on + strand, within PGA1_c30050at 3141.456 kb on - strand, within PGA1_c30050at 3141.460 kb on + strand, within PGA1_c30050at 3141.614 kb on - strand, within PGA1_c30050at 3141.633 kb on + strand, within PGA1_c30050at 3141.636 kb on - strand, within PGA1_c30050at 3141.650 kb on + strand, within PGA1_c30050at 3141.650 kb on + strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.658 kb on - strand, within PGA1_c30050at 3141.688 kb on + strand, within PGA1_c30050at 3141.689 kb on - strand, within PGA1_c30050at 3141.689 kb on - strand, within PGA1_c30050at 3141.704 kb on + strand, within PGA1_c30050at 3141.912 kb on + strand, within PGA1_c30050at 3141.922 kb on + strand, within PGA1_c30050at 3142.073 kb on + strand, within PGA1_c30050at 3142.081 kb on - strand, within PGA1_c30050at 3142.081 kb on - strand, within PGA1_c30050at 3142.119 kb on + strand, within PGA1_c30050at 3142.119 kb on + strand, within PGA1_c30050at 3142.164 kb on + strand, within PGA1_c30050at 3142.164 kb on + strand, within PGA1_c30050at 3142.164 kb on + strand, within PGA1_c30050at 3142.219 kb on + strand, within PGA1_c30050at 3142.227 kb on - strand, within PGA1_c30050at 3142.341 kb on - strand, within PGA1_c30050at 3142.391 kb on + strand, within PGA1_c30050at 3142.391 kb on + strand, within PGA1_c30050at 3142.391 kb on + strand, within PGA1_c30050at 3142.399 kb on - strand, within PGA1_c30050at 3142.399 kb on - strand, within PGA1_c30050at 3142.399 kb on - strand, within PGA1_c30050at 3142.466 kb on + strand, within PGA1_c30050at 3142.466 kb on - strand, within PGA1_c30050at 3142.474 kb on - strand, within PGA1_c30050at 3142.476 kb on + strand, within PGA1_c30050at 3142.484 kb on - strand, within PGA1_c30050at 3142.542 kb on + strand, within PGA1_c30050at 3142.567 kb on - strand, within PGA1_c30050at 3142.582 kb on - strand, within PGA1_c30050at 3142.585 kb on + strand, within PGA1_c30050at 3142.593 kb on - strandat 3142.736 kb on + strandat 3142.788 kb on - strandat 3142.808 kb on - strandat 3142.894 kb on + strand, within PGA1_c30060at 3143.064 kb on + strand, within PGA1_c30060at 3143.074 kb on + strand, within PGA1_c30060at 3143.074 kb on + strand, within PGA1_c30060at 3143.082 kb on - strand, within PGA1_c30060at 3143.082 kb on - strand, within PGA1_c30060at 3143.082 kb on - strand, within PGA1_c30060at 3143.082 kb on - strand, within PGA1_c30060at 3143.136 kb on + strand, within PGA1_c30060at 3143.144 kb on - strand, within PGA1_c30060at 3143.152 kb on - strand, within PGA1_c30060at 3143.168 kb on - strand, within PGA1_c30060at 3143.196 kb on - strand, within PGA1_c30060at 3143.361 kb on + strandat 3143.361 kb on + strandat 3143.361 kb on + strandat 3143.364 kb on - strandat 3143.367 kb on - strandat 3143.406 kb on + strandat 3143.414 kb on - strandat 3143.493 kb on - strand, within PGA1_c30070at 3143.545 kb on + strand, within PGA1_c30070at 3143.551 kb on + strand, within PGA1_c30070at 3143.551 kb on + strand, within PGA1_c30070at 3143.559 kb on - strand, within PGA1_c30070at 3143.619 kb on - strand, within PGA1_c30070at 3143.626 kb on - strand, within PGA1_c30070at 3143.659 kb on + strand, within PGA1_c30070at 3143.681 kb on - strand, within PGA1_c30070at 3143.681 kb on - strand, within PGA1_c30070at 3143.719 kb on - strand, within PGA1_c30070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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3,140,429 + +1.6
3,140,484 + PGA1_c30040 0.33 +0.3
3,140,511 + PGA1_c30040 0.50 -0.8
3,140,516 + PGA1_c30040 0.53 -1.1
3,140,516 + PGA1_c30040 0.53 +0.7
3,140,516 + PGA1_c30040 0.53 -1.5
3,140,521 + PGA1_c30040 0.57 -1.8
3,140,524 - PGA1_c30040 0.58 -0.5
3,140,524 - PGA1_c30040 0.58 -2.4
3,140,524 - PGA1_c30040 0.58 -0.3
3,140,524 - PGA1_c30040 0.58 -1.6
3,140,529 - PGA1_c30040 0.62 +0.8
3,140,543 - PGA1_c30040 0.70 -0.1
3,140,589 + -1.0
3,140,592 - +1.3
3,140,602 + -0.3
3,140,607 + -0.2
3,140,676 + -0.8
3,140,684 - -0.3
3,140,716 + +0.4
3,140,800 - +0.4
3,140,803 - -0.1
3,140,805 - -3.1
3,140,894 + PGA1_c30050 0.12 -1.2
3,140,922 + PGA1_c30050 0.14 -0.2
3,140,949 + PGA1_c30050 0.15 -0.5
3,140,963 - PGA1_c30050 0.15 +0.9
3,141,078 - PGA1_c30050 0.21 -0.8
3,141,102 + PGA1_c30050 0.22 -2.0
3,141,108 + PGA1_c30050 0.22 -1.9
3,141,173 - PGA1_c30050 0.25 -1.6
3,141,217 + PGA1_c30050 0.27 +0.9
3,141,225 - PGA1_c30050 0.28 -1.7
3,141,245 - PGA1_c30050 0.28 -0.1
3,141,324 - PGA1_c30050 0.32 -1.2
3,141,332 + PGA1_c30050 0.32 +0.8
3,141,368 + PGA1_c30050 0.34 -1.6
3,141,412 + PGA1_c30050 0.36 -2.1
3,141,420 - PGA1_c30050 0.36 -2.4
3,141,448 + PGA1_c30050 0.38 -0.5
3,141,456 - PGA1_c30050 0.38 -2.1
3,141,460 + PGA1_c30050 0.38 -1.8
3,141,614 - PGA1_c30050 0.45 -0.6
3,141,633 + PGA1_c30050 0.46 -0.2
3,141,636 - PGA1_c30050 0.46 -2.2
3,141,650 + PGA1_c30050 0.47 -2.4
3,141,650 + PGA1_c30050 0.47 -0.6
3,141,658 - PGA1_c30050 0.47 -0.2
3,141,658 - PGA1_c30050 0.47 +1.5
3,141,658 - PGA1_c30050 0.47 -0.1
3,141,658 - PGA1_c30050 0.47 -0.4
3,141,658 - PGA1_c30050 0.47 -0.4
3,141,658 - PGA1_c30050 0.47 -0.8
3,141,658 - PGA1_c30050 0.47 +0.2
3,141,688 + PGA1_c30050 0.49 -1.8
3,141,689 - PGA1_c30050 0.49 -1.6
3,141,689 - PGA1_c30050 0.49 -0.5
3,141,704 + PGA1_c30050 0.49 -0.1
3,141,912 + PGA1_c30050 0.59 -0.2
3,141,922 + PGA1_c30050 0.59 -2.2
3,142,073 + PGA1_c30050 0.66 -0.6
3,142,081 - PGA1_c30050 0.67 -1.9
3,142,081 - PGA1_c30050 0.67 +0.2
3,142,119 + PGA1_c30050 0.69 -1.6
3,142,119 + PGA1_c30050 0.69 -1.0
3,142,164 + PGA1_c30050 0.71 -2.5
3,142,164 + PGA1_c30050 0.71 -1.3
3,142,164 + PGA1_c30050 0.71 -0.6
3,142,219 + PGA1_c30050 0.73 +0.7
3,142,227 - PGA1_c30050 0.73 -0.5
3,142,341 - PGA1_c30050 0.79 -0.9
3,142,391 + PGA1_c30050 0.81 -0.9
3,142,391 + PGA1_c30050 0.81 -1.4
3,142,391 + PGA1_c30050 0.81 -1.1
3,142,399 - PGA1_c30050 0.81 -0.7
3,142,399 - PGA1_c30050 0.81 -0.2
3,142,399 - PGA1_c30050 0.81 -0.1
3,142,466 + PGA1_c30050 0.84 -0.1
3,142,466 - PGA1_c30050 0.84 -3.0
3,142,474 - PGA1_c30050 0.85 -1.6
3,142,476 + PGA1_c30050 0.85 -4.2
3,142,484 - PGA1_c30050 0.85 -1.0
3,142,542 + PGA1_c30050 0.88 -3.1
3,142,567 - PGA1_c30050 0.89 -2.6
3,142,582 - PGA1_c30050 0.90 -0.9
3,142,585 + PGA1_c30050 0.90 -1.1
3,142,593 - +1.4
3,142,736 + -0.8
3,142,788 - +0.4
3,142,808 - -1.3
3,142,894 + PGA1_c30060 0.18 -0.1
3,143,064 + PGA1_c30060 0.54 +1.4
3,143,074 + PGA1_c30060 0.56 +0.9
3,143,074 + PGA1_c30060 0.56 -0.4
3,143,082 - PGA1_c30060 0.58 -0.8
3,143,082 - PGA1_c30060 0.58 -0.8
3,143,082 - PGA1_c30060 0.58 +0.5
3,143,082 - PGA1_c30060 0.58 -0.5
3,143,136 + PGA1_c30060 0.69 -1.5
3,143,144 - PGA1_c30060 0.71 -1.0
3,143,152 - PGA1_c30060 0.73 -0.2
3,143,168 - PGA1_c30060 0.76 -0.6
3,143,196 - PGA1_c30060 0.82 +0.5
3,143,361 + +0.2
3,143,361 + -0.6
3,143,361 + -0.6
3,143,364 - -0.1
3,143,367 - -2.1
3,143,406 + -0.4
3,143,414 - -1.2
3,143,493 - PGA1_c30070 0.14 +0.5
3,143,545 + PGA1_c30070 0.17 +0.7
3,143,551 + PGA1_c30070 0.17 -0.1
3,143,551 + PGA1_c30070 0.17 +0.4
3,143,559 - PGA1_c30070 0.18 -0.9
3,143,619 - PGA1_c30070 0.21 +1.0
3,143,626 - PGA1_c30070 0.22 +0.9
3,143,659 + PGA1_c30070 0.24 -0.3
3,143,681 - PGA1_c30070 0.25 -0.4
3,143,681 - PGA1_c30070 0.25 -0.3
3,143,719 - PGA1_c30070 0.28 -1.2

Or see this region's nucleotide sequence