Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29810

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,117,059	+		PGA1_c29800	0.39	+1.0
3,117,067	+		PGA1_c29800	0.40	-0.2
3,117,075	-		PGA1_c29800	0.40	+0.6
3,117,080	-		PGA1_c29800	0.41	+0.2
3,117,085	+		PGA1_c29800	0.41	+0.2
3,117,118	+		PGA1_c29800	0.45	-0.2
3,117,118	+		PGA1_c29800	0.45	+0.4
3,117,118	+		PGA1_c29800	0.45	-0.3
3,117,124	-		PGA1_c29800	0.45	+1.1
3,117,128	+		PGA1_c29800	0.46	-0.2
3,117,128	+		PGA1_c29800	0.46	+0.4
3,117,136	-		PGA1_c29800	0.47	+0.2
3,117,136	-		PGA1_c29800	0.47	-1.4
3,117,183	-		PGA1_c29800	0.51	+0.8
3,117,203	-		PGA1_c29800	0.53	-0.2
3,117,247	+		PGA1_c29800	0.58	-1.7
3,117,247	+		PGA1_c29800	0.58	-0.1
3,117,255	-		PGA1_c29800	0.59	+1.3
3,117,255	-		PGA1_c29800	0.59	+0.7
3,117,271	-		PGA1_c29800	0.60	-0.8
3,117,356	+		PGA1_c29800	0.69	-0.2
3,117,449	+		PGA1_c29800	0.78	+0.0
3,117,473	-		PGA1_c29800	0.81	+1.2
3,117,580	+				-0.2
3,117,588	-				-0.5
3,117,615	+				+0.9
3,117,615	+				-1.1
3,117,615	+				-1.7
3,117,615	+				+0.1
3,117,615	+				-0.8
3,117,623	-				+0.4
3,117,623	-				-0.1
3,117,623	-				+0.2
3,117,623	-				-1.4
3,117,659	+				-1.3
3,117,696	+				-0.7
3,117,696	+				+0.4
3,117,701	+				-0.3
3,117,718	+				+0.3
3,117,944	-				-0.2
3,117,980	+				-1.7
3,117,988	-				+0.2
3,118,003	+				-1.3
3,118,011	-				+0.1
3,118,047	+				+0.0
3,118,047	+				-2.8
3,118,047	+				-1.4
3,118,055	-				-1.5
3,118,150	-		PGA1_c29810	0.14	+0.6
3,118,171	+		PGA1_c29810	0.16	-2.1
3,118,171	+		PGA1_c29810	0.16	-1.5
3,118,171	+		PGA1_c29810	0.16	+0.1
3,118,171	+		PGA1_c29810	0.16	+0.8
3,118,171	+		PGA1_c29810	0.16	-0.1
3,118,234	+		PGA1_c29810	0.24	-1.0
3,118,234	+		PGA1_c29810	0.24	-1.4
3,118,234	+		PGA1_c29810	0.24	-2.3
3,118,242	-		PGA1_c29810	0.25	-1.0
3,118,264	+		PGA1_c29810	0.27	-1.6
3,118,318	+		PGA1_c29810	0.34	+0.4
3,118,331	-		PGA1_c29810	0.35	+0.5
3,118,332	+		PGA1_c29810	0.35	-1.0
3,118,339	+		PGA1_c29810	0.36	-0.6
3,118,354	-		PGA1_c29810	0.38	-1.3
3,118,449	+		PGA1_c29810	0.50	-3.1
3,118,466	+		PGA1_c29810	0.52	-0.4
3,118,467	-		PGA1_c29810	0.52	-1.9
3,118,467	-		PGA1_c29810	0.52	+0.0
3,118,467	-		PGA1_c29810	0.52	-1.7
3,118,524	-		PGA1_c29810	0.59	-0.1
3,118,564	-		PGA1_c29810	0.63	+0.9
3,118,655	-		PGA1_c29810	0.74	-2.8
3,118,661	-		PGA1_c29810	0.75	+0.8
3,118,683	-		PGA1_c29810	0.78	-1.2
3,118,685	+		PGA1_c29810	0.78	-0.3
3,118,688	-		PGA1_c29810	0.78	-1.4
3,118,688	-		PGA1_c29810	0.78	-1.5
3,118,747	+		PGA1_c29810	0.85	+1.2
3,118,784	+		PGA1_c29810	0.90	-1.2
3,118,834	+				-1.7
3,118,834	+				+0.8
3,118,834	+				-0.0
3,118,839	+				-1.0
3,118,842	-				+0.6
3,118,842	-				+1.2
3,118,842	-				+0.8
3,118,842	-				-1.5
3,118,842	-				-0.2
3,118,842	-				+0.3
3,118,844	+				+0.6
3,118,886	+				-0.7
3,118,910	+				+1.4
3,118,910	+				+0.2
3,118,918	-				+0.7
3,118,918	-				+0.2
3,118,918	-				-0.7
3,118,976	-		PGA1_c29820	0.10	-0.3
3,118,976	-		PGA1_c29820	0.10	-0.3
3,118,976	-		PGA1_c29820	0.10	-1.7
3,118,983	+		PGA1_c29820	0.11	-1.7
3,118,983	+		PGA1_c29820	0.11	+0.2
3,118,992	-		PGA1_c29820	0.12	-0.9
3,119,048	-		PGA1_c29820	0.17	+0.0
3,119,052	-		PGA1_c29820	0.17	-2.1
3,119,054	+		PGA1_c29820	0.18	+1.3
3,119,062	-		PGA1_c29820	0.18	-1.4
3,119,102	-		PGA1_c29820	0.22	-2.1
3,119,157	+		PGA1_c29820	0.27	-0.4
3,119,163	+		PGA1_c29820	0.28	+0.6
3,119,168	+		PGA1_c29820	0.28	-1.3
3,119,176	-		PGA1_c29820	0.29	-1.3
3,119,176	-		PGA1_c29820	0.29	-0.7
3,119,176	-		PGA1_c29820	0.29	-0.5
3,119,176	-		PGA1_c29820	0.29	-1.2
3,119,176	-		PGA1_c29820	0.29	-0.8
3,119,183	+		PGA1_c29820	0.30	+0.5
3,119,183	+		PGA1_c29820	0.30	+0.5
3,119,183	+		PGA1_c29820	0.30	+0.7
3,119,183	+		PGA1_c29820	0.30	+0.9
3,119,183	+		PGA1_c29820	0.30	-0.3
3,119,183	+		PGA1_c29820	0.30	+0.3
3,119,191	-		PGA1_c29820	0.31	-0.9
3,119,263	-		PGA1_c29820	0.37	-0.1
3,119,282	-		PGA1_c29820	0.39	-0.3
3,119,396	-		PGA1_c29820	0.50	-0.4
3,119,407	+		PGA1_c29820	0.51	+0.2
3,119,415	-		PGA1_c29820	0.52	-0.2
3,119,432	-		PGA1_c29820	0.53	-1.1
3,119,442	+		PGA1_c29820	0.54	-0.8
3,119,476	+		PGA1_c29820	0.57	-0.8
3,119,530	-		PGA1_c29820	0.62	+1.3
3,119,600	+		PGA1_c29820	0.69	+0.3
3,119,613	-		PGA1_c29820	0.70	+0.1
3,119,665	-		PGA1_c29820	0.75	+0.5
3,119,704	+		PGA1_c29820	0.79	-0.6
3,119,721	-		PGA1_c29820	0.80	+0.7
3,119,765	+		PGA1_c29820	0.84	-0.9
3,119,835	-				-2.3
3,119,837	+				+0.6
3,119,845	-				-0.1
3,119,845	-				-0.6
3,119,845	-				-2.7
3,119,867	-				+1.0