Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27700

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
2,885,753	+				-0.2
2,885,758	-				-1.1
2,885,758	-				-0.8
2,885,758	-				-1.6
2,885,761	-				-1.3
2,885,773	+				-0.1
2,885,787	+				-1.0
2,885,820	+		PGA1_c27690	0.12	+0.3
2,885,828	-		PGA1_c27690	0.13	+0.7
2,885,830	+		PGA1_c27690	0.14	-1.4
2,885,853	+		PGA1_c27690	0.18	-2.1
2,885,922	-		PGA1_c27690	0.30	+0.5
2,885,980	+		PGA1_c27690	0.40	-0.2
2,885,980	+		PGA1_c27690	0.40	-0.6
2,885,983	-		PGA1_c27690	0.40	+0.3
2,885,983	-		PGA1_c27690	0.40	-0.1
2,885,983	-		PGA1_c27690	0.40	+0.2
2,885,988	-		PGA1_c27690	0.41	-1.1
2,885,988	-		PGA1_c27690	0.41	+0.0
2,885,988	-		PGA1_c27690	0.41	+1.1
2,885,999	-		PGA1_c27690	0.43	-2.9
2,886,003	-		PGA1_c27690	0.44	+0.7
2,886,033	+		PGA1_c27690	0.49	-2.2
2,886,041	-		PGA1_c27690	0.50	-0.4
2,886,054	+		PGA1_c27690	0.52	+0.7
2,886,062	-		PGA1_c27690	0.54	+0.3
2,886,062	-		PGA1_c27690	0.54	-0.8
2,886,062	-		PGA1_c27690	0.54	+0.1
2,886,090	-		PGA1_c27690	0.59	+0.1
2,886,100	+		PGA1_c27690	0.60	-0.7
2,886,108	-		PGA1_c27690	0.62	-0.5
2,886,126	-		PGA1_c27690	0.65	-1.7
2,886,200	+		PGA1_c27690	0.78	-0.6
2,886,247	+		PGA1_c27690	0.86	-1.8
2,886,260	-		PGA1_c27690	0.88	-3.0
2,886,270	+				+0.2
2,886,278	+				-0.7
2,886,297	+				+0.7
2,886,297	+				-1.3
2,886,297	+				-1.8
2,886,307	+				+0.5
2,886,317	-				+1.5
2,886,317	-				+0.6
2,886,325	-				-0.4
2,886,335	-				-0.1
2,886,335	-				-0.7
2,886,336	-				+1.3
2,886,336	-				-0.1
2,886,356	+				-0.6
2,886,356	+				-0.1
2,886,364	+				-0.1
2,886,367	+				+0.6
2,886,372	+				-0.8
2,886,372	-				+0.6
2,886,380	-				+0.5
2,886,454	-				+0.6
2,886,456	+				-1.6
2,886,456	+				-1.1
2,886,456	+				-1.6
2,886,456	+				+0.9
2,886,456	+				+1.0
2,886,456	+				-3.5
2,886,456	+				-0.1
2,886,464	-				-0.3
2,886,464	-				-0.3
2,886,464	-				+0.6
2,886,464	-				-1.6
2,886,464	-				+0.7
2,886,464	-				-0.6
2,886,502	+				-2.0
2,886,502	+				-0.8
2,886,503	+				+0.4
2,886,510	-				-1.8
2,886,510	-				+0.5
2,886,510	-				-0.3
2,886,510	-				-1.0
2,886,510	-				-0.4
2,886,511	-				-1.4
2,886,511	-				+0.3
2,886,511	-				-0.7
2,886,557	+				+0.2
2,886,565	-				-1.2
2,886,572	+				-0.6
2,886,572	+				+1.5
2,886,580	-				+0.2
2,886,580	-				-0.0
2,886,580	-				-0.3
2,886,593	+				+0.9
2,886,610	+				+1.5
2,886,639	+				-0.4
2,886,639	+				-2.3
2,886,649	+				-2.3
2,886,752	+				+0.5
2,886,752	+				-0.8
2,886,752	+				-1.4
2,886,752	+				+0.6
2,886,752	+				+2.2
2,886,752	+				-1.3
2,886,760	-				-0.4
2,886,760	-				+0.3
2,886,760	-				-1.7
2,886,760	-				+1.7
2,886,760	-				+0.3
2,886,760	-				+2.1
2,886,760	-				-0.5
2,886,762	+				+0.7
2,886,762	+				-1.1
2,886,762	+				+0.3
2,886,762	+				+0.5
2,886,765	-				-1.3
2,886,765	-				-0.2
2,886,767	+				-0.1
2,886,782	-				-2.1
2,886,782	-				-1.8
2,886,818	-				-0.3
2,886,820	+				-0.3
2,886,820	+				-0.8
2,886,820	+				-0.1
2,886,910	+		PGA1_c27700	0.12	+0.4
2,886,914	+		PGA1_c27700	0.12	-1.8
2,886,914	+		PGA1_c27700	0.12	+0.7
2,886,914	+		PGA1_c27700	0.12	+0.4
2,886,915	-		PGA1_c27700	0.12	-0.6
2,886,918	-		PGA1_c27700	0.12	-0.7
2,886,918	-		PGA1_c27700	0.12	-0.4
2,886,922	-		PGA1_c27700	0.12	-0.7
2,886,922	-		PGA1_c27700	0.12	+1.0
2,886,956	+		PGA1_c27700	0.14	+0.1
2,886,956	+		PGA1_c27700	0.14	+0.5
2,886,964	-		PGA1_c27700	0.14	-1.4
2,886,964	-		PGA1_c27700	0.14	-1.5
2,886,979	+		PGA1_c27700	0.15	-2.3
2,887,044	+		PGA1_c27700	0.19	-1.6
2,887,057	-		PGA1_c27700	0.19	-1.0
2,887,077	-		PGA1_c27700	0.20	-0.1
2,887,106	+		PGA1_c27700	0.22	-2.9
2,887,106	+		PGA1_c27700	0.22	-0.6
2,887,114	-		PGA1_c27700	0.22	-2.4
2,887,168	-		PGA1_c27700	0.25	+0.5
2,887,191	+		PGA1_c27700	0.26	+1.1
2,887,191	+		PGA1_c27700	0.26	-1.4
2,887,191	+		PGA1_c27700	0.26	-0.7
2,887,199	-		PGA1_c27700	0.27	-1.4
2,887,379	-		PGA1_c27700	0.36	-0.9
2,887,474	+		PGA1_c27700	0.41	-0.6
2,887,482	-		PGA1_c27700	0.41	-0.8
2,887,501	+		PGA1_c27700	0.42	-3.4
2,887,501	+		PGA1_c27700	0.42	-0.9
2,887,501	+		PGA1_c27700	0.42	+0.3
2,887,501	+		PGA1_c27700	0.42	-0.9
2,887,501	+		PGA1_c27700	0.42	-0.9
2,887,501	+		PGA1_c27700	0.42	-0.3
2,887,509	-		PGA1_c27700	0.42	-0.4
2,887,509	-		PGA1_c27700	0.42	-0.0
2,887,509	-		PGA1_c27700	0.42	+0.4
2,887,509	-		PGA1_c27700	0.42	-1.0
2,887,570	-		PGA1_c27700	0.46	-0.0
2,887,640	+		PGA1_c27700	0.49	-2.0
2,887,640	+		PGA1_c27700	0.49	-0.7
2,887,687	-		PGA1_c27700	0.52	+0.6
2,887,796	+		PGA1_c27700	0.57	-0.5
2,887,825	+		PGA1_c27700	0.59	-1.1
2,887,877	+		PGA1_c27700	0.61	+0.3
2,887,999	+		PGA1_c27700	0.68	-0.5
2,888,051	-		PGA1_c27700	0.70	-1.2
2,888,059	-		PGA1_c27700	0.71	+1.3
2,888,117	-		PGA1_c27700	0.74	+0.4
2,888,149	+		PGA1_c27700	0.75	-0.6
2,888,190	+		PGA1_c27700	0.77	-1.3
2,888,204	-		PGA1_c27700	0.78	-1.2
2,888,209	-		PGA1_c27700	0.78	-0.3
2,888,324	+		PGA1_c27700	0.84	+0.5
2,888,324	+		PGA1_c27700	0.84	+0.1
2,888,332	-		PGA1_c27700	0.85	-0.5
2,888,332	-		PGA1_c27700	0.85	-0.5
2,888,332	-		PGA1_c27700	0.85	+0.2
2,888,332	-		PGA1_c27700	0.85	-2.1
2,888,332	-		PGA1_c27700	0.85	-0.0
2,888,332	-		PGA1_c27700	0.85	-0.9
2,888,332	-		PGA1_c27700	0.85	+1.1
2,888,343	-		PGA1_c27700	0.85	-1.0
2,888,345	-		PGA1_c27700	0.85	-0.6
2,888,348	+		PGA1_c27700	0.85	-1.3
2,888,361	+		PGA1_c27700	0.86	+0.4
2,888,371	+		PGA1_c27700	0.87	-0.4
2,888,379	-		PGA1_c27700	0.87	-2.1
2,888,389	+		PGA1_c27700	0.88	-2.3
2,888,506	+				-2.3
2,888,579	+				-0.4
2,888,587	-				-0.4
2,888,648	-				-0.9
2,888,704	-				+0.2
2,888,708	-				-1.2
2,888,810	+		PGA1_c27710	0.20	-0.6
2,888,810	+		PGA1_c27710	0.20	+0.3
2,888,817	+		PGA1_c27710	0.21	-1.6
2,888,818	-		PGA1_c27710	0.21	-0.3
2,888,867	+		PGA1_c27710	0.28	+0.1
2,888,867	+		PGA1_c27710	0.28	+0.1
2,888,867	+		PGA1_c27710	0.28	-1.1
2,888,874	+		PGA1_c27710	0.29	-1.0
2,888,875	-		PGA1_c27710	0.29	-0.3
2,888,919	-		PGA1_c27710	0.35	-0.5
2,888,926	+		PGA1_c27710	0.36	-0.5
2,888,934	-		PGA1_c27710	0.37	+1.1
2,888,934	-		PGA1_c27710	0.37	+1.1
2,888,934	-		PGA1_c27710	0.37	-0.2
2,888,969	+		PGA1_c27710	0.42	-0.3
2,888,969	+		PGA1_c27710	0.42	+0.2
2,888,969	+		PGA1_c27710	0.42	-0.3
2,888,969	+		PGA1_c27710	0.42	-2.6
2,888,977	-		PGA1_c27710	0.43	+1.3
2,888,977	-		PGA1_c27710	0.43	-1.5
2,888,977	-		PGA1_c27710	0.43	+1.0
2,888,977	-		PGA1_c27710	0.43	-0.5
2,888,977	-		PGA1_c27710	0.43	-0.6
2,888,977	-		PGA1_c27710	0.43	+0.9
2,888,977	-		PGA1_c27710	0.43	-1.8
2,888,977	-		PGA1_c27710	0.43	-1.1
2,889,015	-		PGA1_c27710	0.48	+0.0
2,889,015	-		PGA1_c27710	0.48	-1.2
2,889,038	+		PGA1_c27710	0.51	-0.4
2,889,100	-		PGA1_c27710	0.60	-1.6
2,889,130	+		PGA1_c27710	0.64	-0.9
2,889,152	-		PGA1_c27710	0.67	-0.7
2,889,186	+		PGA1_c27710	0.71	-0.3
2,889,247	-		PGA1_c27710	0.80	-0.8
2,889,281	-		PGA1_c27710	0.84	-1.3
2,889,285	+		PGA1_c27710	0.85	+0.5
2,889,286	-		PGA1_c27710	0.85	-1.7
2,889,301	-		PGA1_c27710	0.87	-0.2
2,889,354	-				+0.6
2,889,394	-				-0.6
2,889,433	+				-1.2
2,889,433	+				-1.3
2,889,470	-				-0.5
2,889,470	-				-0.5
2,889,482	-				-1.1
2,889,492	-				-0.8
2,889,524	+				+0.1
2,889,532	-				-1.7
2,889,542	-				-1.2
2,889,566	+				-0.3
2,889,573	-				-1.1
2,889,605	+				+0.0
2,889,605	+				-1.6