Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02140 and PGA1_c02150 are separated by 26 nucleotides PGA1_c02150 and PGA1_c02170 are separated by 398 nucleotides PGA1_c02170 and PGA1_c02180 are separated by 2 nucleotides
PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973
_c02140
PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134
_c02150
PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336
_c02170
PGA1_c02180: PGA1_c02180 - dihydrolipoyl dehydrogenase LpdA, at 198,339 to 199,760
_c02180
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.977 kb on + strand at 197.335 kb on + strand at 197.368 kb on + strand at 197.370 kb on - strand at 197.376 kb on - strand at 197.412 kb on - strand at 197.470 kb on - strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.501 kb on + strand at 197.507 kb on + strand at 197.509 kb on - strand at 197.515 kb on - strand at 197.621 kb on + strand, within PGA1_c02170 at 197.621 kb on + strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.681 kb on + strand, within PGA1_c02170 at 197.687 kb on + strand, within PGA1_c02170 at 197.771 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.792 kb on + strand, within PGA1_c02170 at 197.793 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.942 kb on + strand, within PGA1_c02170 at 198.056 kb on - strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.104 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.128 kb on - strand, within PGA1_c02170 at 198.168 kb on - strand, within PGA1_c02170 at 198.193 kb on + strand, within PGA1_c02170 at 198.201 kb on - strand, within PGA1_c02170 at 198.204 kb on + strand, within PGA1_c02170 at 198.220 kb on - strand, within PGA1_c02170 at 198.437 kb on + strand at 198.444 kb on + strand at 198.445 kb on - strand at 198.447 kb on + strand at 198.520 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.533 kb on - strand, within PGA1_c02180 at 198.538 kb on - strand, within PGA1_c02180 at 198.544 kb on - strand, within PGA1_c02180 at 198.558 kb on + strand, within PGA1_c02180 at 198.583 kb on - strand, within PGA1_c02180 at 198.601 kb on - strand, within PGA1_c02180 at 198.619 kb on + strand, within PGA1_c02180 at 198.635 kb on - strand, within PGA1_c02180 at 198.638 kb on - strand, within PGA1_c02180 at 198.663 kb on - strand, within PGA1_c02180 at 198.679 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.817 kb on + strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.908 kb on - strand, within PGA1_c02180 at 198.909 kb on - strand, within PGA1_c02180 at 198.916 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.042 kb on - strand, within PGA1_c02180 at 199.058 kb on + strand, within PGA1_c02180 at 199.108 kb on + strand, within PGA1_c02180 at 199.123 kb on - strand, within PGA1_c02180 at 199.158 kb on - strand, within PGA1_c02180 at 199.191 kb on + strand, within PGA1_c02180 at 199.192 kb on + strand, within PGA1_c02180 at 199.199 kb on - strand, within PGA1_c02180 at 199.240 kb on - strand, within PGA1_c02180 at 199.266 kb on + strand, within PGA1_c02180 at 199.299 kb on + strand, within PGA1_c02180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 196,977 + -0.3 197,335 + -0.1 197,368 + +2.0 197,370 - +1.7 197,376 - -0.5 197,412 - -1.4 197,470 - +3.3 197,486 + -1.3 197,486 + +0.9 197,486 + +1.2 197,501 + +0.9 197,507 + -0.3 197,509 - +1.4 197,515 - -0.4 197,621 + PGA1_c02170 0.11 +2.0 197,621 + PGA1_c02170 0.11 +0.4 197,629 - PGA1_c02170 0.12 +2.0 197,629 - PGA1_c02170 0.12 +3.0 197,629 - PGA1_c02170 0.12 +1.0 197,681 + PGA1_c02170 0.18 -1.1 197,687 + PGA1_c02170 0.19 +1.8 197,771 + PGA1_c02170 0.30 +1.7 197,785 + PGA1_c02170 0.31 -1.0 197,785 + PGA1_c02170 0.31 +0.0 197,790 + PGA1_c02170 0.32 +1.0 197,790 + PGA1_c02170 0.32 +0.8 197,790 + PGA1_c02170 0.32 -0.1 197,790 + PGA1_c02170 0.32 -0.2 197,790 + PGA1_c02170 0.32 +0.1 197,792 + PGA1_c02170 0.32 -0.3 197,793 - PGA1_c02170 0.32 -0.4 197,867 - PGA1_c02170 0.42 +0.7 197,867 - PGA1_c02170 0.42 +0.2 197,942 + PGA1_c02170 0.51 +1.1 198,056 - PGA1_c02170 0.65 -0.2 198,096 + PGA1_c02170 0.70 +0.3 198,096 + PGA1_c02170 0.70 -1.3 198,104 - PGA1_c02170 0.71 +0.4 198,109 - PGA1_c02170 0.72 +1.2 198,109 - PGA1_c02170 0.72 -0.3 198,128 - PGA1_c02170 0.74 -1.6 198,168 - PGA1_c02170 0.79 -0.5 198,193 + PGA1_c02170 0.82 -1.6 198,201 - PGA1_c02170 0.83 +0.5 198,204 + PGA1_c02170 0.83 +0.2 198,220 - PGA1_c02170 0.85 -0.7 198,437 + -1.0 198,444 + -2.5 198,445 - +0.4 198,447 + -2.4 198,520 + PGA1_c02180 0.13 +0.2 198,525 + PGA1_c02180 0.13 -0.4 198,525 + PGA1_c02180 0.13 +1.5 198,525 + PGA1_c02180 0.13 +0.1 198,533 - PGA1_c02180 0.14 +1.0 198,538 - PGA1_c02180 0.14 +0.0 198,544 - PGA1_c02180 0.14 +0.0 198,558 + PGA1_c02180 0.15 -3.3 198,583 - PGA1_c02180 0.17 -1.1 198,601 - PGA1_c02180 0.18 +2.1 198,619 + PGA1_c02180 0.20 -0.6 198,635 - PGA1_c02180 0.21 +1.4 198,638 - PGA1_c02180 0.21 +0.3 198,663 - PGA1_c02180 0.23 -0.6 198,679 + PGA1_c02180 0.24 +0.5 198,725 + PGA1_c02180 0.27 -0.6 198,725 + PGA1_c02180 0.27 -1.2 198,817 + PGA1_c02180 0.34 +0.3 198,834 - PGA1_c02180 0.35 -0.1 198,834 - PGA1_c02180 0.35 -0.5 198,908 - PGA1_c02180 0.40 +0.2 198,909 - PGA1_c02180 0.40 +1.7 198,916 + PGA1_c02180 0.41 +0.8 198,953 + PGA1_c02180 0.43 -0.2 198,953 + PGA1_c02180 0.43 -1.6 199,034 + PGA1_c02180 0.49 +1.2 199,034 + PGA1_c02180 0.49 +1.5 199,042 - PGA1_c02180 0.49 -0.5 199,058 + PGA1_c02180 0.51 -1.6 199,108 + PGA1_c02180 0.54 +0.2 199,123 - PGA1_c02180 0.55 +1.0 199,158 - PGA1_c02180 0.58 -1.2 199,191 + PGA1_c02180 0.60 +0.6 199,192 + PGA1_c02180 0.60 +2.2 199,199 - PGA1_c02180 0.60 +0.0 199,240 - PGA1_c02180 0.63 -1.0 199,266 + PGA1_c02180 0.65 +0.3 199,299 + PGA1_c02180 0.68 +0.7
Or see this region's nucleotide sequence