Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19810

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c19800 and PGA1_c19810 are separated by 226 nucleotidesPGA1_c19810 and PGA1_c19820 overlap by 4 nucleotides PGA1_c19800: PGA1_c19800 - cytosol aminopeptidase PepA, at 2,053,367 to 2,054,842 _c19800 PGA1_c19810: PGA1_c19810 - Predicted permeases, at 2,055,069 to 2,056,220 _c19810 PGA1_c19820: PGA1_c19820 - Predicted permeases, at 2,056,217 to 2,057,320 _c19820 Position (kb) 2055 2056 2057Strain fitness (log2 ratio) -2 -1 0 1at 2054.139 kb on + strand, within PGA1_c19800at 2054.153 kb on + strand, within PGA1_c19800at 2054.197 kb on + strand, within PGA1_c19800at 2054.221 kb on - strand, within PGA1_c19800at 2054.228 kb on + strand, within PGA1_c19800at 2054.229 kb on - strand, within PGA1_c19800at 2054.241 kb on - strand, within PGA1_c19800at 2054.316 kb on - strand, within PGA1_c19800at 2054.479 kb on - strand, within PGA1_c19800at 2054.703 kb on + strandat 2054.716 kb on + strandat 2054.778 kb on - strandat 2054.858 kb on - strandat 2054.858 kb on - strandat 2054.864 kb on - strandat 2054.937 kb on + strandat 2054.945 kb on - strandat 2054.970 kb on + strandat 2054.978 kb on + strandat 2054.992 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
2,054,139 + PGA1_c19800 0.52 -2.2
2,054,153 + PGA1_c19800 0.53 -1.3
2,054,197 + PGA1_c19800 0.56 -0.0
2,054,221 - PGA1_c19800 0.58 -1.8
2,054,228 + PGA1_c19800 0.58 -1.0
2,054,229 - PGA1_c19800 0.58 +0.2
2,054,241 - PGA1_c19800 0.59 +1.0
2,054,316 - PGA1_c19800 0.64 -1.3
2,054,479 - PGA1_c19800 0.75 -1.9
2,054,703 + +0.1
2,054,716 + -1.8
2,054,778 - +0.6
2,054,858 - +0.2
2,054,858 - -2.5
2,054,864 - -1.3
2,054,937 + -1.7
2,054,945 - +0.1
2,054,970 + +0.2
2,054,978 + -0.5
2,054,992 - -0.3

Or see this region's nucleotide sequence