Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0016 and Psest_0017 overlap by 4 nucleotides Psest_0017 and Psest_0018 overlap by 4 nucleotides Psest_0018 and Psest_0019 are separated by 120 nucleotides
Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634
_0016
Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290
_0017
Psest_0018: Psest_0018 - ectoine/hydroxyectoine ABC transporter, permease protein EhuC, at 18,287 to 18,946
_0018
Psest_0019: Psest_0019 - ectoine/hydroxyectoine ABC transporter solute-binding protein, at 19,067 to 19,924
_0019
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.416 kb on + strand, within Psest_0016 at 17.417 kb on - strand, within Psest_0016 at 17.628 kb on + strand at 17.629 kb on - strand at 17.629 kb on - strand at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.984 kb on - strand, within Psest_0017 at 17.992 kb on + strand, within Psest_0017 at 18.046 kb on + strand, within Psest_0017 at 18.047 kb on - strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.745 kb on - strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018 at 19.494 kb on + strand, within Psest_0019 at 19.494 kb on + strand, within Psest_0019 at 19.495 kb on - strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.761 kb on + strand, within Psest_0019 at 19.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 17,287 + Psest_0016 0.58 +1.3 17,287 + Psest_0016 0.58 -0.8 17,287 + Psest_0016 0.58 -0.4 17,287 + Psest_0016 0.58 -2.2 17,287 + Psest_0016 0.58 -1.3 17,287 + Psest_0016 0.58 -0.1 17,287 + Psest_0016 0.58 +1.7 17,288 - Psest_0016 0.59 -0.3 17,288 - Psest_0016 0.59 +2.6 17,288 - Psest_0016 0.59 +0.6 17,416 + Psest_0016 0.74 -0.3 17,417 - Psest_0016 0.74 +1.4 17,628 + -0.4 17,629 - -2.0 17,629 - +0.4 17,833 + Psest_0017 0.31 +0.7 17,833 + Psest_0017 0.31 +0.7 17,833 + Psest_0017 0.31 +2.6 17,834 - Psest_0017 0.31 -1.4 17,834 - Psest_0017 0.31 -0.9 17,834 - Psest_0017 0.31 -0.5 17,834 - Psest_0017 0.31 -0.5 17,983 + Psest_0017 0.53 +0.3 17,983 + Psest_0017 0.53 -0.1 17,983 + Psest_0017 0.53 -1.7 17,983 + Psest_0017 0.53 -0.2 17,984 - Psest_0017 0.53 +0.1 17,992 + Psest_0017 0.55 -0.1 18,046 + Psest_0017 0.63 +0.4 18,047 - Psest_0017 0.63 +0.2 18,057 + Psest_0017 0.65 +0.0 18,057 + Psest_0017 0.65 -1.2 18,058 - Psest_0017 0.65 -0.8 18,058 - Psest_0017 0.65 +1.4 18,058 - Psest_0017 0.65 -0.2 18,058 - Psest_0017 0.65 -0.6 18,061 + Psest_0017 0.65 +0.0 18,061 + Psest_0017 0.65 -1.7 18,061 + Psest_0017 0.65 +0.0 18,061 + Psest_0017 0.65 +0.0 18,062 - Psest_0017 0.65 +0.4 18,062 - Psest_0017 0.65 +0.2 18,062 - Psest_0017 0.65 +0.6 18,062 - Psest_0017 0.65 -0.3 18,062 - Psest_0017 0.65 +0.3 18,062 - Psest_0017 0.65 -1.4 18,062 - Psest_0017 0.65 +0.6 18,062 - Psest_0017 0.65 +0.8 18,062 - Psest_0017 0.65 +0.5 18,062 - Psest_0017 0.65 -0.4 18,062 - Psest_0017 0.65 -0.1 18,062 - Psest_0017 0.65 +0.0 18,073 + Psest_0017 0.67 -1.4 18,073 + Psest_0017 0.67 -0.2 18,074 - Psest_0017 0.67 -0.6 18,074 - Psest_0017 0.67 +1.2 18,375 + Psest_0018 0.13 +0.1 18,375 + Psest_0018 0.13 -0.1 18,375 + Psest_0018 0.13 -0.9 18,375 + Psest_0018 0.13 -0.4 18,375 + Psest_0018 0.13 -0.4 18,375 + Psest_0018 0.13 +1.2 18,375 + Psest_0018 0.13 +0.7 18,375 + Psest_0018 0.13 +0.3 18,376 - Psest_0018 0.13 +0.1 18,376 - Psest_0018 0.13 +0.4 18,376 - Psest_0018 0.13 +1.5 18,376 - Psest_0018 0.13 +1.5 18,376 - Psest_0018 0.13 +0.7 18,376 - Psest_0018 0.13 +1.6 18,744 + Psest_0018 0.69 -0.6 18,744 + Psest_0018 0.69 +0.1 18,744 + Psest_0018 0.69 +0.2 18,745 - Psest_0018 0.69 +1.0 18,795 + Psest_0018 0.77 -0.8 18,795 + Psest_0018 0.77 +0.6 18,795 + Psest_0018 0.77 +0.4 18,795 + Psest_0018 0.77 +0.1 18,795 + Psest_0018 0.77 +0.8 18,795 + Psest_0018 0.77 +1.3 18,795 + Psest_0018 0.77 +1.0 18,795 + Psest_0018 0.77 +0.2 18,795 + Psest_0018 0.77 -0.9 18,795 + Psest_0018 0.77 +0.2 18,795 + Psest_0018 0.77 +0.4 18,795 + Psest_0018 0.77 +1.1 18,795 + Psest_0018 0.77 +0.9 18,795 + Psest_0018 0.77 -0.6 18,795 + Psest_0018 0.77 +1.0 18,795 + Psest_0018 0.77 +1.0 18,796 - Psest_0018 0.77 +1.6 18,796 - Psest_0018 0.77 +0.6 18,796 - Psest_0018 0.77 +0.4 19,494 + Psest_0019 0.50 -0.8 19,494 + Psest_0019 0.50 -1.0 19,495 - Psest_0019 0.50 +0.9 19,571 + Psest_0019 0.59 -0.1 19,571 + Psest_0019 0.59 -2.0 19,571 + Psest_0019 0.59 -1.4 19,571 + Psest_0019 0.59 -0.3 19,572 - Psest_0019 0.59 -0.1 19,572 - Psest_0019 0.59 -0.8 19,572 - Psest_0019 0.59 +0.1 19,599 + Psest_0019 0.62 +0.4 19,599 + Psest_0019 0.62 +0.9 19,599 + Psest_0019 0.62 -0.6 19,599 + Psest_0019 0.62 -1.1 19,599 + Psest_0019 0.62 +0.5 19,599 + Psest_0019 0.62 +1.0 19,599 + Psest_0019 0.62 +0.3 19,599 + Psest_0019 0.62 +2.0 19,599 + Psest_0019 0.62 -1.3 19,599 + Psest_0019 0.62 +0.0 19,599 + Psest_0019 0.62 -0.1 19,599 + Psest_0019 0.62 -0.1 19,600 - Psest_0019 0.62 -0.8 19,600 - Psest_0019 0.62 -2.1 19,600 - Psest_0019 0.62 -0.3 19,600 - Psest_0019 0.62 +0.7 19,600 - Psest_0019 0.62 -1.2 19,600 - Psest_0019 0.62 -0.6 19,600 - Psest_0019 0.62 -0.1 19,600 - Psest_0019 0.62 +0.8 19,600 - Psest_0019 0.62 +0.0 19,600 - Psest_0019 0.62 +0.3 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -1.2 19,600 - Psest_0019 0.62 -0.4 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 +3.2 19,600 - Psest_0019 0.62 -0.3 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -1.2 19,600 - Psest_0019 0.62 -0.7 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -0.3 19,600 - Psest_0019 0.62 +0.0 19,600 - Psest_0019 0.62 +1.0 19,600 - Psest_0019 0.62 -0.4 19,600 - Psest_0019 0.62 -0.4 19,600 - Psest_0019 0.62 -1.7 19,600 - Psest_0019 0.62 +2.2 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 -2.2 19,600 - Psest_0019 0.62 -1.4 19,600 - Psest_0019 0.62 -0.5 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -0.5 19,715 + Psest_0019 0.76 +0.9 19,715 + Psest_0019 0.76 +0.9 19,715 + Psest_0019 0.76 +0.3 19,761 + Psest_0019 0.81 +0.5 19,946 + -0.1
Or see this region's nucleotide sequence