Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1821

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,918,950	+		Psest_1819	0.52	-2.0
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	+0.5
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-3.2
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	+0.2
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.8
1,918,950	+		Psest_1819	0.52	-1.0
1,918,950	+		Psest_1819	0.52	-1.0
1,918,950	+		Psest_1819	0.52	-2.1
1,918,950	+		Psest_1819	0.52	+0.0
1,918,950	+		Psest_1819	0.52	-1.3
1,918,950	+		Psest_1819	0.52	-1.4
1,918,950	+		Psest_1819	0.52	-0.5
1,918,950	+		Psest_1819	0.52	-0.7
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-1.1
1,918,950	+		Psest_1819	0.52	-1.3
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	-1.1
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	-0.4
1,918,950	+		Psest_1819	0.52	-1.9
1,918,950	+		Psest_1819	0.52	-0.9
1,918,950	+		Psest_1819	0.52	+0.3
1,918,950	+		Psest_1819	0.52	-0.9
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-1.4
1,918,950	+		Psest_1819	0.52	-0.0
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.5
1,918,951	-		Psest_1819	0.52	-1.8
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-0.3
1,918,951	-		Psest_1819	0.52	-1.7
1,918,951	-		Psest_1819	0.52	-2.0
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-1.8
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	+0.1
1,918,951	-		Psest_1819	0.52	-2.3
1,918,951	-		Psest_1819	0.52	+0.1
1,918,951	-		Psest_1819	0.52	+0.2
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-0.5
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-3.2
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-2.5
1,918,951	-		Psest_1819	0.52	-2.2
1,918,951	-		Psest_1819	0.52	-1.9
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.4
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-1.1
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	+0.2
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-1.7
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.2
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-0.7
1,918,952	+		Psest_1819	0.52	-1.0
1,918,953	-		Psest_1819	0.52	-1.4
1,918,953	-		Psest_1819	0.52	-1.2
1,919,069	-		Psest_1819	0.64	-0.3
1,919,148	-		Psest_1819	0.72	-0.6
1,919,148	-		Psest_1819	0.72	-0.7
1,919,182	+		Psest_1819	0.75	-1.3
1,919,182	+		Psest_1819	0.75	-2.0
1,919,182	+		Psest_1819	0.75	-1.6
1,919,183	-		Psest_1819	0.75	+0.6
1,919,183	-		Psest_1819	0.75	-0.2
1,919,183	-		Psest_1819	0.75	-0.1
1,919,210	-		Psest_1819	0.78	-1.4
1,919,378	+				+1.0
1,919,387	+				-2.2
1,919,387	+				-0.7
1,919,387	+				-0.8
1,919,387	+				-0.8
1,919,387	+				-1.4
1,919,387	+				+0.1
1,919,388	-				-1.2
1,919,388	-				-0.5
1,919,388	-				-1.3
1,919,388	-				-1.7
1,919,388	-				-1.3
1,919,388	-				-2.9
1,919,388	-				-1.3
1,919,388	-				-0.8
1,919,388	-				+0.8
1,919,480	+				+0.1
1,919,480	+				+0.1
1,919,480	+				+0.5
1,919,480	+				-1.4
1,919,480	+				+0.4
1,919,480	+				+0.7
1,919,480	+				+0.0
1,919,480	+				-1.1
1,919,481	-				+1.2
1,919,689	+		Psest_1820	0.51	-1.9
1,919,689	+		Psest_1820	0.51	-0.3
1,919,689	+		Psest_1820	0.51	+0.1
1,919,689	+		Psest_1820	0.51	+3.1
1,919,689	+		Psest_1820	0.51	-0.2
1,919,689	+		Psest_1820	0.51	+0.4
1,919,689	+		Psest_1820	0.51	+0.4
1,919,689	+		Psest_1820	0.51	-1.2
1,919,689	+		Psest_1820	0.51	+0.6
1,919,689	+		Psest_1820	0.51	-1.1
1,919,690	-		Psest_1820	0.51	-2.1
1,919,690	-		Psest_1820	0.51	-1.0
1,919,690	-		Psest_1820	0.51	-0.7
1,919,690	-		Psest_1820	0.51	-0.5
1,919,690	-		Psest_1820	0.51	-0.9
1,919,690	-		Psest_1820	0.51	-2.6
1,919,690	-		Psest_1820	0.51	-2.9
1,919,690	-		Psest_1820	0.51	-1.8
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	-2.2
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	-0.0
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	+1.2
1,919,691	+		Psest_1820	0.51	-1.6
1,919,691	+		Psest_1820	0.51	-1.2
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.0
1,919,691	+		Psest_1820	0.51	+0.3
1,919,691	+		Psest_1820	0.51	+0.0
1,919,692	-		Psest_1820	0.51	-1.1
1,919,692	-		Psest_1820	0.51	-2.3
1,919,692	-		Psest_1820	0.51	+0.7
1,919,692	-		Psest_1820	0.51	-3.1
1,919,692	-		Psest_1820	0.51	-2.7
1,919,692	-		Psest_1820	0.51	+0.3
1,919,692	-		Psest_1820	0.51	-2.4
1,919,692	-		Psest_1820	0.51	-1.5
1,919,704	-		Psest_1820	0.54	-1.5
1,919,711	+		Psest_1820	0.55	-0.7
1,919,751	+		Psest_1820	0.63	+0.2
1,919,751	+		Psest_1820	0.63	+1.2
1,919,751	+		Psest_1820	0.63	+0.5
1,919,751	+		Psest_1820	0.63	+1.5
1,919,751	+		Psest_1820	0.63	-0.1
1,919,751	+		Psest_1820	0.63	-1.7
1,919,751	+		Psest_1820	0.63	-0.4
1,919,751	+		Psest_1820	0.63	+0.2
1,919,752	-		Psest_1820	0.64	-1.0
1,919,752	-		Psest_1820	0.64	+1.5
1,919,752	-		Psest_1820	0.64	-2.4
1,919,752	-		Psest_1820	0.64	+0.1
1,919,752	-		Psest_1820	0.64	+0.3
1,919,753	+		Psest_1820	0.64	+0.4
1,919,753	+		Psest_1820	0.64	-2.4
1,919,753	+		Psest_1820	0.64	-0.1
1,919,753	+		Psest_1820	0.64	+0.4
1,919,753	+		Psest_1820	0.64	-0.5
1,919,753	+		Psest_1820	0.64	-1.0
1,919,753	+		Psest_1820	0.64	-0.5
1,919,753	+		Psest_1820	0.64	-2.0
1,919,753	+		Psest_1820	0.64	-1.1
1,919,753	+		Psest_1820	0.64	+0.1
1,919,753	+		Psest_1820	0.64	-0.4
1,919,753	+		Psest_1820	0.64	+1.0
1,919,753	+		Psest_1820	0.64	-0.6
1,919,753	+		Psest_1820	0.64	+0.2
1,919,753	+		Psest_1820	0.64	+0.3
1,919,754	-		Psest_1820	0.64	-1.6
1,919,754	-		Psest_1820	0.64	-1.8
1,919,754	-		Psest_1820	0.64	+0.3
1,919,754	-		Psest_1820	0.64	-0.8
1,919,754	-		Psest_1820	0.64	-2.0
1,919,754	-		Psest_1820	0.64	-0.2
1,919,754	-		Psest_1820	0.64	-0.8
1,919,754	-		Psest_1820	0.64	-1.6
1,919,754	-		Psest_1820	0.64	-0.7
1,919,754	-		Psest_1820	0.64	-1.8
1,919,755	+		Psest_1820	0.64	+1.2
1,919,755	+		Psest_1820	0.64	-0.1
1,919,755	+		Psest_1820	0.64	+0.8
1,919,755	+		Psest_1820	0.64	-1.6
1,919,755	+		Psest_1820	0.64	+2.1
1,919,755	+		Psest_1820	0.64	-0.8
1,919,755	+		Psest_1820	0.64	-0.0
1,919,755	+		Psest_1820	0.64	-0.2
1,919,755	+		Psest_1820	0.64	+1.0
1,919,755	+		Psest_1820	0.64	+1.8
1,919,755	+		Psest_1820	0.64	-0.3
1,919,756	-		Psest_1820	0.64	-2.2
1,919,756	-		Psest_1820	0.64	-2.0
1,919,756	-		Psest_1820	0.64	-0.2
1,919,756	-		Psest_1820	0.64	-0.3
1,919,756	-		Psest_1820	0.64	-1.6
1,919,889	+				+0.1
1,919,889	+				+0.9
1,919,890	-				-2.5
1,919,893	+				-0.1
1,919,893	+				+0.2
1,919,893	+				-1.8
1,919,893	+				+1.9
1,919,894	-				-0.2
1,919,894	-				-2.2
1,919,894	-				-2.1
1,919,907	-				-3.1
1,919,907	-				-1.8
1,919,912	+				-1.0
1,919,913	-				-1.2
1,919,913	-				+0.4
1,919,945	+				-0.9
1,920,151	-		Psest_1821	0.16	-2.3
1,920,166	-		Psest_1821	0.17	-0.5
1,920,193	-		Psest_1821	0.19	-1.8
1,920,352	-		Psest_1821	0.30	-1.0
1,920,394	+		Psest_1821	0.33	-2.8
1,920,394	+		Psest_1821	0.33	-1.5
1,920,394	+		Psest_1821	0.33	-1.5
1,920,396	+		Psest_1821	0.33	-1.2
1,920,396	+		Psest_1821	0.33	-1.4
1,920,397	-		Psest_1821	0.33	-1.8
1,920,398	+		Psest_1821	0.33	-0.6
1,920,398	+		Psest_1821	0.33	-2.4
1,920,398	+		Psest_1821	0.33	-1.9
1,920,398	+		Psest_1821	0.33	-1.7
1,920,398	+		Psest_1821	0.33	-2.3
1,920,399	-		Psest_1821	0.33	-0.2
1,920,399	-		Psest_1821	0.33	-2.4
1,920,399	-		Psest_1821	0.33	-0.5
1,920,481	+		Psest_1821	0.39	-0.8
1,920,481	+		Psest_1821	0.39	-2.4
1,920,481	+		Psest_1821	0.39	-2.0
1,920,481	+		Psest_1821	0.39	-1.1
1,920,482	-		Psest_1821	0.39	-1.0
1,920,482	-		Psest_1821	0.39	-2.7
1,920,482	-		Psest_1821	0.39	-2.3
1,920,499	+		Psest_1821	0.40	-1.1
1,920,499	+		Psest_1821	0.40	-0.5
1,920,499	+		Psest_1821	0.40	-2.5
1,920,516	+		Psest_1821	0.41	-1.7
1,920,516	+		Psest_1821	0.41	-2.5
1,920,575	+		Psest_1821	0.46	-1.0
1,920,619	-		Psest_1821	0.49	-1.7
1,920,679	+		Psest_1821	0.53	-0.9
1,920,680	-		Psest_1821	0.53	-2.1
1,920,680	-		Psest_1821	0.53	-1.1
1,920,774	+		Psest_1821	0.60	-2.0
1,920,896	+		Psest_1821	0.68	-1.6
1,921,030	+		Psest_1821	0.78	-0.9
1,921,030	+		Psest_1821	0.78	-2.2
1,921,030	+		Psest_1821	0.78	-0.2
1,921,030	+		Psest_1821	0.78	-2.7
1,921,031	-		Psest_1821	0.78	-0.9
1,921,031	-		Psest_1821	0.78	-0.8
1,921,031	-		Psest_1821	0.78	-1.6
1,921,173	+		Psest_1821	0.88	-0.9
1,921,180	+		Psest_1821	0.89	-0.2
1,921,180	+		Psest_1821	0.89	-0.9
1,921,180	+		Psest_1821	0.89	-2.2
1,921,180	+		Psest_1821	0.89	-3.2
1,921,181	-		Psest_1821	0.89	-0.9
1,921,181	-		Psest_1821	0.89	-1.5
1,921,207	+				-2.1
1,921,207	+				-1.7
1,921,208	-				-0.6
1,921,208	-				-2.7
1,921,208	-				-0.6
1,921,208	-				-2.1
1,921,208	-				-1.4
1,921,208	-				-1.5
1,921,208	-				-1.8
1,921,212	-				-0.2
1,921,250	+				-0.5
1,921,251	-				-0.4
1,921,369	-				-2.3
1,921,383	+				-2.2
1,921,384	-				-1.4
1,921,447	+		Psest_1822	0.13	-0.9
1,921,447	+		Psest_1822	0.13	-2.7
1,921,448	-		Psest_1822	0.13	-1.2
1,921,448	-		Psest_1822	0.13	-1.6
1,921,448	-		Psest_1822	0.13	-2.5
1,921,448	-		Psest_1822	0.13	-1.6
1,921,448	-		Psest_1822	0.13	-0.6
1,921,493	+		Psest_1822	0.19	-1.4
1,921,497	+		Psest_1822	0.19	-3.3
1,921,497	+		Psest_1822	0.19	-1.3
1,921,515	+		Psest_1822	0.22	-0.5
1,921,516	-		Psest_1822	0.22	-1.1
1,921,524	+		Psest_1822	0.23	-1.8
1,921,685	+		Psest_1822	0.44	+0.5
1,921,686	-		Psest_1822	0.44	-2.8
1,921,686	-		Psest_1822	0.44	-2.8
1,921,828	+		Psest_1822	0.63	-1.8
1,921,845	-		Psest_1822	0.66	-1.1
1,921,846	+		Psest_1822	0.66	-2.8
1,921,846	+		Psest_1822	0.66	-3.1
1,921,846	+		Psest_1822	0.66	-1.8
1,921,848	+		Psest_1822	0.66	-0.3
1,921,848	+		Psest_1822	0.66	-0.5
1,921,848	+		Psest_1822	0.66	-2.3
1,921,848	+		Psest_1822	0.66	-1.6
1,921,848	+		Psest_1822	0.66	-0.7
1,921,848	+		Psest_1822	0.66	-1.9
1,921,848	+		Psest_1822	0.66	-1.9
1,921,848	+		Psest_1822	0.66	-1.5
1,921,848	+		Psest_1822	0.66	-0.9
1,921,848	+		Psest_1822	0.66	+0.1
1,921,848	+		Psest_1822	0.66	-1.7
1,921,849	-		Psest_1822	0.66	-3.1
1,921,849	-		Psest_1822	0.66	+0.5
1,921,849	-		Psest_1822	0.66	-1.7
1,921,853	+		Psest_1822	0.67	-1.8
1,921,853	+		Psest_1822	0.67	-2.3
1,921,918	+		Psest_1822	0.75	-1.4
1,922,080	+				-1.5
1,922,080	+				-0.4
1,922,080	+				-0.2
1,922,080	+				-2.5
1,922,093	+				-1.8
1,922,093	+				-0.5
1,922,094	-				-2.2
1,922,094	-				-1.1
1,922,094	-				-0.2
1,922,099	+				-0.2
1,922,099	+				+1.6
1,922,100	-				-1.2
1,922,134	+				-1.2
1,922,158	+				-0.3
1,922,158	+				+0.0
1,922,158	+				-1.7
1,922,158	+				-0.2
1,922,158	+				+0.1
1,922,159	-				-2.1
1,922,256	-		Psest_1823	0.17	-0.7
1,922,290	+		Psest_1823	0.20	+0.9
1,922,290	+		Psest_1823	0.20	-0.7
1,922,318	+		Psest_1823	0.23	+0.1
1,922,319	-		Psest_1823	0.23	-3.1