Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1819

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,917,570	+		Psest_1818	0.22	-2.4
1,917,570	+		Psest_1818	0.22	-2.1
1,917,571	-		Psest_1818	0.22	-2.4
1,917,571	-		Psest_1818	0.22	-3.3
1,917,621	+		Psest_1818	0.27	-2.0
1,917,641	+		Psest_1818	0.28	-1.0
1,917,642	-		Psest_1818	0.28	-1.2
1,917,716	+		Psest_1818	0.35	-2.2
1,917,716	+		Psest_1818	0.35	-0.7
1,917,716	+		Psest_1818	0.35	-0.9
1,917,716	+		Psest_1818	0.35	-3.5
1,917,716	+		Psest_1818	0.35	-3.0
1,917,716	+		Psest_1818	0.35	-2.3
1,917,717	-		Psest_1818	0.35	-0.0
1,917,717	-		Psest_1818	0.35	-1.5
1,917,729	+		Psest_1818	0.36	-0.9
1,917,729	+		Psest_1818	0.36	-1.9
1,917,730	-		Psest_1818	0.36	-1.6
1,917,730	-		Psest_1818	0.36	-2.3
1,917,790	-		Psest_1818	0.42	-0.9
1,917,843	+		Psest_1818	0.46	-0.7
1,917,844	-		Psest_1818	0.46	-3.1
1,917,852	+		Psest_1818	0.47	-2.5
1,917,852	+		Psest_1818	0.47	-1.0
1,917,852	+		Psest_1818	0.47	-2.0
1,917,852	+		Psest_1818	0.47	-3.0
1,917,853	-		Psest_1818	0.47	+0.3
1,917,853	-		Psest_1818	0.47	-0.9
1,917,853	-		Psest_1818	0.47	-1.7
1,917,853	-		Psest_1818	0.47	-2.7
1,917,853	-		Psest_1818	0.47	-3.5
1,917,853	-		Psest_1818	0.47	-1.1
1,917,853	-		Psest_1818	0.47	-1.1
1,917,853	-		Psest_1818	0.47	-3.2
1,917,853	-		Psest_1818	0.47	-0.9
1,917,853	-		Psest_1818	0.47	-1.1
1,917,853	-		Psest_1818	0.47	-1.1
1,917,853	-		Psest_1818	0.47	-2.5
1,917,853	-		Psest_1818	0.47	-2.1
1,917,969	+		Psest_1818	0.58	-2.4
1,917,969	+		Psest_1818	0.58	+0.5
1,917,969	+		Psest_1818	0.58	-2.2
1,917,969	+		Psest_1818	0.58	-0.6
1,917,969	+		Psest_1818	0.58	-1.2
1,917,970	-		Psest_1818	0.58	-1.3
1,917,970	-		Psest_1818	0.58	-1.8
1,917,970	-		Psest_1818	0.58	-1.7
1,917,970	-		Psest_1818	0.58	-1.5
1,917,970	-		Psest_1818	0.58	-3.0
1,918,017	+		Psest_1818	0.62	-1.0
1,918,017	+		Psest_1818	0.62	-4.1
1,918,017	+		Psest_1818	0.62	-3.2
1,918,017	+		Psest_1818	0.62	-1.4
1,918,018	-		Psest_1818	0.62	-2.8
1,918,090	-		Psest_1818	0.68	-2.3
1,918,090	-		Psest_1818	0.68	+1.1
1,918,215	-		Psest_1818	0.80	-2.4
1,918,295	+		Psest_1818	0.87	-1.0
1,918,295	+		Psest_1818	0.87	-2.2
1,918,307	+		Psest_1818	0.88	-1.6
1,918,307	+		Psest_1818	0.88	-1.1
1,918,307	+		Psest_1818	0.88	-2.7
1,918,307	+		Psest_1818	0.88	-0.8
1,918,307	+		Psest_1818	0.88	-0.5
1,918,307	+		Psest_1818	0.88	-1.5
1,918,308	-		Psest_1818	0.88	-1.2
1,918,308	-		Psest_1818	0.88	+1.1
1,918,308	-		Psest_1818	0.88	-2.7
1,918,331	+				-0.7
1,918,331	+				+0.1
1,918,332	-				-0.5
1,918,420	+				+0.5
1,918,427	-				-0.2
1,918,470	+				-0.6
1,918,470	+				-0.4
1,918,470	+				-1.1
1,918,470	+				-0.5
1,918,470	+				-1.0
1,918,471	-				+0.2
1,918,471	-				+0.0
1,918,471	-				-2.1
1,918,471	-				-0.2
1,918,471	-				-1.0
1,918,471	-				-0.8
1,918,471	-				-0.6
1,918,471	-				-0.7
1,918,544	-		Psest_1819	0.10	-0.7
1,918,553	-		Psest_1819	0.11	-0.6
1,918,631	+		Psest_1819	0.19	-0.8
1,918,631	+		Psest_1819	0.19	-0.7
1,918,632	-		Psest_1819	0.19	-1.2
1,918,632	-		Psest_1819	0.19	+1.1
1,918,632	-		Psest_1819	0.19	-1.4
1,918,632	-		Psest_1819	0.19	-0.2
1,918,635	+		Psest_1819	0.19	-0.2
1,918,659	+		Psest_1819	0.22	-1.2
1,918,660	-		Psest_1819	0.22	-0.0
1,918,672	+		Psest_1819	0.23	-1.9
1,918,672	+		Psest_1819	0.23	-0.9
1,918,672	+		Psest_1819	0.23	-0.7
1,918,672	+		Psest_1819	0.23	-0.8
1,918,695	-		Psest_1819	0.26	+0.5
1,918,695	-		Psest_1819	0.26	-1.5
1,918,785	-		Psest_1819	0.35	+0.0
1,918,785	-		Psest_1819	0.35	-0.6
1,918,785	-		Psest_1819	0.35	+0.1
1,918,865	-		Psest_1819	0.43	-0.6
1,918,901	+		Psest_1819	0.47	-0.8
1,918,901	+		Psest_1819	0.47	-1.7
1,918,902	-		Psest_1819	0.47	-1.0
1,918,902	-		Psest_1819	0.47	+0.1
1,918,902	-		Psest_1819	0.47	-1.2
1,918,950	+		Psest_1819	0.52	-2.0
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	+0.5
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-3.2
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	+0.2
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.8
1,918,950	+		Psest_1819	0.52	-1.0
1,918,950	+		Psest_1819	0.52	-1.0
1,918,950	+		Psest_1819	0.52	-2.1
1,918,950	+		Psest_1819	0.52	+0.0
1,918,950	+		Psest_1819	0.52	-1.3
1,918,950	+		Psest_1819	0.52	-1.4
1,918,950	+		Psest_1819	0.52	-0.5
1,918,950	+		Psest_1819	0.52	-0.7
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-1.1
1,918,950	+		Psest_1819	0.52	-1.3
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	-1.1
1,918,950	+		Psest_1819	0.52	-1.8
1,918,950	+		Psest_1819	0.52	-0.4
1,918,950	+		Psest_1819	0.52	-1.9
1,918,950	+		Psest_1819	0.52	-0.9
1,918,950	+		Psest_1819	0.52	+0.3
1,918,950	+		Psest_1819	0.52	-0.9
1,918,950	+		Psest_1819	0.52	-1.5
1,918,950	+		Psest_1819	0.52	-1.4
1,918,950	+		Psest_1819	0.52	-0.0
1,918,950	+		Psest_1819	0.52	-0.6
1,918,950	+		Psest_1819	0.52	-0.5
1,918,951	-		Psest_1819	0.52	-1.8
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-0.3
1,918,951	-		Psest_1819	0.52	-1.7
1,918,951	-		Psest_1819	0.52	-2.0
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-1.8
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	+0.1
1,918,951	-		Psest_1819	0.52	-2.3
1,918,951	-		Psest_1819	0.52	+0.1
1,918,951	-		Psest_1819	0.52	+0.2
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-0.5
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-3.2
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-2.5
1,918,951	-		Psest_1819	0.52	-2.2
1,918,951	-		Psest_1819	0.52	-1.9
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.9
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-0.4
1,918,951	-		Psest_1819	0.52	-1.2
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	-1.1
1,918,951	-		Psest_1819	0.52	-1.3
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-1.5
1,918,951	-		Psest_1819	0.52	+0.2
1,918,951	-		Psest_1819	0.52	-1.4
1,918,951	-		Psest_1819	0.52	-1.7
1,918,951	-		Psest_1819	0.52	-0.6
1,918,951	-		Psest_1819	0.52	-0.7
1,918,951	-		Psest_1819	0.52	-1.0
1,918,951	-		Psest_1819	0.52	-0.2
1,918,951	-		Psest_1819	0.52	-0.8
1,918,951	-		Psest_1819	0.52	-0.7
1,918,952	+		Psest_1819	0.52	-1.0
1,918,953	-		Psest_1819	0.52	-1.4
1,918,953	-		Psest_1819	0.52	-1.2
1,919,069	-		Psest_1819	0.64	-0.3
1,919,148	-		Psest_1819	0.72	-0.6
1,919,148	-		Psest_1819	0.72	-0.7
1,919,182	+		Psest_1819	0.75	-1.3
1,919,182	+		Psest_1819	0.75	-2.0
1,919,182	+		Psest_1819	0.75	-1.6
1,919,183	-		Psest_1819	0.75	+0.6
1,919,183	-		Psest_1819	0.75	-0.2
1,919,183	-		Psest_1819	0.75	-0.1
1,919,210	-		Psest_1819	0.78	-1.4
1,919,378	+				+1.0
1,919,387	+				-2.2
1,919,387	+				-0.7
1,919,387	+				-0.8
1,919,387	+				-0.8
1,919,387	+				-1.4
1,919,387	+				+0.1
1,919,388	-				-1.2
1,919,388	-				-0.5
1,919,388	-				-1.3
1,919,388	-				-1.7
1,919,388	-				-1.3
1,919,388	-				-2.9
1,919,388	-				-1.3
1,919,388	-				-0.8
1,919,388	-				+0.8
1,919,480	+				+0.1
1,919,480	+				+0.1
1,919,480	+				+0.5
1,919,480	+				-1.4
1,919,480	+				+0.4
1,919,480	+				+0.7
1,919,480	+				+0.0
1,919,480	+				-1.1
1,919,481	-				+1.2
1,919,689	+		Psest_1820	0.51	-1.9
1,919,689	+		Psest_1820	0.51	-0.3
1,919,689	+		Psest_1820	0.51	+0.1
1,919,689	+		Psest_1820	0.51	+3.1
1,919,689	+		Psest_1820	0.51	-0.2
1,919,689	+		Psest_1820	0.51	+0.4
1,919,689	+		Psest_1820	0.51	+0.4
1,919,689	+		Psest_1820	0.51	-1.2
1,919,689	+		Psest_1820	0.51	+0.6
1,919,689	+		Psest_1820	0.51	-1.1
1,919,690	-		Psest_1820	0.51	-2.1
1,919,690	-		Psest_1820	0.51	-1.0
1,919,690	-		Psest_1820	0.51	-0.7
1,919,690	-		Psest_1820	0.51	-0.5
1,919,690	-		Psest_1820	0.51	-0.9
1,919,690	-		Psest_1820	0.51	-2.6
1,919,690	-		Psest_1820	0.51	-2.9
1,919,690	-		Psest_1820	0.51	-1.8
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	-2.2
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	-0.0
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.4
1,919,691	+		Psest_1820	0.51	+1.2
1,919,691	+		Psest_1820	0.51	-1.6
1,919,691	+		Psest_1820	0.51	-1.2
1,919,691	+		Psest_1820	0.51	+0.5
1,919,691	+		Psest_1820	0.51	-0.0
1,919,691	+		Psest_1820	0.51	+0.3
1,919,691	+		Psest_1820	0.51	+0.0
1,919,692	-		Psest_1820	0.51	-1.1
1,919,692	-		Psest_1820	0.51	-2.3
1,919,692	-		Psest_1820	0.51	+0.7
1,919,692	-		Psest_1820	0.51	-3.1
1,919,692	-		Psest_1820	0.51	-2.7
1,919,692	-		Psest_1820	0.51	+0.3
1,919,692	-		Psest_1820	0.51	-2.4
1,919,692	-		Psest_1820	0.51	-1.5
1,919,704	-		Psest_1820	0.54	-1.5
1,919,711	+		Psest_1820	0.55	-0.7
1,919,751	+		Psest_1820	0.63	+0.2
1,919,751	+		Psest_1820	0.63	+1.2
1,919,751	+		Psest_1820	0.63	+0.5
1,919,751	+		Psest_1820	0.63	+1.5
1,919,751	+		Psest_1820	0.63	-0.1
1,919,751	+		Psest_1820	0.63	-1.7
1,919,751	+		Psest_1820	0.63	-0.4
1,919,751	+		Psest_1820	0.63	+0.2
1,919,752	-		Psest_1820	0.64	-1.0
1,919,752	-		Psest_1820	0.64	+1.5
1,919,752	-		Psest_1820	0.64	-2.4
1,919,752	-		Psest_1820	0.64	+0.1
1,919,752	-		Psest_1820	0.64	+0.3
1,919,753	+		Psest_1820	0.64	+0.4
1,919,753	+		Psest_1820	0.64	-2.4
1,919,753	+		Psest_1820	0.64	-0.1
1,919,753	+		Psest_1820	0.64	+0.4
1,919,753	+		Psest_1820	0.64	-0.5
1,919,753	+		Psest_1820	0.64	-1.0
1,919,753	+		Psest_1820	0.64	-0.5
1,919,753	+		Psest_1820	0.64	-2.0
1,919,753	+		Psest_1820	0.64	-1.1
1,919,753	+		Psest_1820	0.64	+0.1
1,919,753	+		Psest_1820	0.64	-0.4
1,919,753	+		Psest_1820	0.64	+1.0
1,919,753	+		Psest_1820	0.64	-0.6
1,919,753	+		Psest_1820	0.64	+0.2
1,919,753	+		Psest_1820	0.64	+0.3
1,919,754	-		Psest_1820	0.64	-1.6
1,919,754	-		Psest_1820	0.64	-1.8
1,919,754	-		Psest_1820	0.64	+0.3
1,919,754	-		Psest_1820	0.64	-0.8
1,919,754	-		Psest_1820	0.64	-2.0
1,919,754	-		Psest_1820	0.64	-0.2
1,919,754	-		Psest_1820	0.64	-0.8
1,919,754	-		Psest_1820	0.64	-1.6
1,919,754	-		Psest_1820	0.64	-0.7
1,919,754	-		Psest_1820	0.64	-1.8
1,919,755	+		Psest_1820	0.64	+1.2
1,919,755	+		Psest_1820	0.64	-0.1
1,919,755	+		Psest_1820	0.64	+0.8
1,919,755	+		Psest_1820	0.64	-1.6
1,919,755	+		Psest_1820	0.64	+2.1
1,919,755	+		Psest_1820	0.64	-0.8
1,919,755	+		Psest_1820	0.64	-0.0
1,919,755	+		Psest_1820	0.64	-0.2
1,919,755	+		Psest_1820	0.64	+1.0
1,919,755	+		Psest_1820	0.64	+1.8
1,919,755	+		Psest_1820	0.64	-0.3
1,919,756	-		Psest_1820	0.64	-2.2
1,919,756	-		Psest_1820	0.64	-2.0
1,919,756	-		Psest_1820	0.64	-0.2
1,919,756	-		Psest_1820	0.64	-0.3
1,919,756	-		Psest_1820	0.64	-1.6
1,919,889	+				+0.1
1,919,889	+				+0.9
1,919,890	-				-2.5
1,919,893	+				-0.1
1,919,893	+				+0.2
1,919,893	+				-1.8
1,919,893	+				+1.9
1,919,894	-				-0.2
1,919,894	-				-2.2
1,919,894	-				-2.1
1,919,907	-				-3.1
1,919,907	-				-1.8
1,919,912	+				-1.0
1,919,913	-				-1.2
1,919,913	-				+0.4
1,919,945	+				-0.9
1,920,151	-		Psest_1821	0.16	-2.3
1,920,166	-		Psest_1821	0.17	-0.5
1,920,193	-		Psest_1821	0.19	-1.8
1,920,352	-		Psest_1821	0.30	-1.0
1,920,394	+		Psest_1821	0.33	-2.8
1,920,394	+		Psest_1821	0.33	-1.5
1,920,394	+		Psest_1821	0.33	-1.5
1,920,396	+		Psest_1821	0.33	-1.2
1,920,396	+		Psest_1821	0.33	-1.4
1,920,397	-		Psest_1821	0.33	-1.8
1,920,398	+		Psest_1821	0.33	-0.6
1,920,398	+		Psest_1821	0.33	-2.4
1,920,398	+		Psest_1821	0.33	-1.9
1,920,398	+		Psest_1821	0.33	-1.7
1,920,398	+		Psest_1821	0.33	-2.3
1,920,399	-		Psest_1821	0.33	-0.2
1,920,399	-		Psest_1821	0.33	-2.4
1,920,399	-		Psest_1821	0.33	-0.5