Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17190 and PGA1_c17200 are separated by 133 nucleotides PGA1_c17200 and PGA1_c17210 are separated by 76 nucleotides PGA1_c17210 and PGA1_c17220 overlap by 1 nucleotides
PGA1_c17190: PGA1_c17190 - Predicted membrane protein, at 1,793,829 to 1,794,509
_c17190
PGA1_c17200: PGA1_c17200 - transcriptional regulator, TetR family, at 1,794,643 to 1,795,119
_c17200
PGA1_c17210: PGA1_c17210 - cell division protein ZapA-like protein, at 1,795,196 to 1,795,594
_c17210
PGA1_c17220: PGA1_c17220 - hypothetical protein, at 1,795,594 to 1,796,622
_c17220
Position (kb) 1795
1796 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1794.264 kb on + strand, within PGA1_c17190 at 1794.279 kb on - strand, within PGA1_c17190 at 1794.281 kb on + strand, within PGA1_c17190 at 1794.286 kb on + strand, within PGA1_c17190 at 1794.289 kb on - strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.294 kb on - strand, within PGA1_c17190 at 1794.373 kb on + strand, within PGA1_c17190 at 1794.377 kb on - strand, within PGA1_c17190 at 1794.424 kb on + strand, within PGA1_c17190 at 1794.438 kb on - strand, within PGA1_c17190 at 1794.455 kb on - strand at 1794.470 kb on + strand at 1794.470 kb on + strand at 1794.604 kb on - strand at 1794.608 kb on - strand at 1794.668 kb on + strand at 1794.754 kb on + strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.765 kb on + strand, within PGA1_c17200 at 1794.839 kb on - strand, within PGA1_c17200 at 1794.978 kb on - strand, within PGA1_c17200 at 1795.152 kb on - strand at 1795.152 kb on - strand at 1795.476 kb on + strand, within PGA1_c17210 at 1795.527 kb on - strand, within PGA1_c17210 at 1795.537 kb on - strand, within PGA1_c17210 at 1795.552 kb on + strand, within PGA1_c17210 at 1795.726 kb on + strand, within PGA1_c17220 at 1795.749 kb on + strand, within PGA1_c17220 at 1795.767 kb on - strand, within PGA1_c17220 at 1795.767 kb on - strand, within PGA1_c17220 at 1795.777 kb on - strand, within PGA1_c17220 at 1795.898 kb on - strand, within PGA1_c17220 at 1796.156 kb on + strand, within PGA1_c17220 at 1796.382 kb on + strand, within PGA1_c17220 at 1796.382 kb on + strand, within PGA1_c17220 at 1796.390 kb on - strand, within PGA1_c17220 at 1796.441 kb on + strand, within PGA1_c17220 at 1796.458 kb on + strand, within PGA1_c17220 at 1796.466 kb on - strand, within PGA1_c17220 at 1796.503 kb on - strand, within PGA1_c17220 at 1796.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 1,794,264 + PGA1_c17190 0.64 -1.2 1,794,279 - PGA1_c17190 0.66 +0.1 1,794,281 + PGA1_c17190 0.66 -1.0 1,794,286 + PGA1_c17190 0.67 -1.6 1,794,289 - PGA1_c17190 0.68 +3.0 1,794,292 + PGA1_c17190 0.68 +2.4 1,794,292 + PGA1_c17190 0.68 -1.0 1,794,294 - PGA1_c17190 0.68 +0.4 1,794,373 + PGA1_c17190 0.80 -0.4 1,794,377 - PGA1_c17190 0.80 +0.3 1,794,424 + PGA1_c17190 0.87 -0.3 1,794,438 - PGA1_c17190 0.89 +0.0 1,794,455 - -1.0 1,794,470 + -1.0 1,794,470 + +0.6 1,794,604 - +1.8 1,794,608 - -2.0 1,794,668 + -1.7 1,794,754 + PGA1_c17200 0.23 -1.2 1,794,762 - PGA1_c17200 0.25 +1.3 1,794,762 - PGA1_c17200 0.25 +1.4 1,794,765 + PGA1_c17200 0.26 -0.0 1,794,839 - PGA1_c17200 0.41 -0.7 1,794,978 - PGA1_c17200 0.70 +1.3 1,795,152 - -1.1 1,795,152 - -0.1 1,795,476 + PGA1_c17210 0.70 -1.0 1,795,527 - PGA1_c17210 0.83 -1.8 1,795,537 - PGA1_c17210 0.85 -0.6 1,795,552 + PGA1_c17210 0.89 +1.0 1,795,726 + PGA1_c17220 0.13 -2.0 1,795,749 + PGA1_c17220 0.15 -1.0 1,795,767 - PGA1_c17220 0.17 -2.7 1,795,767 - PGA1_c17220 0.17 +0.2 1,795,777 - PGA1_c17220 0.18 -0.0 1,795,898 - PGA1_c17220 0.30 -1.8 1,796,156 + PGA1_c17220 0.55 +1.0 1,796,382 + PGA1_c17220 0.77 +1.0 1,796,382 + PGA1_c17220 0.77 -0.0 1,796,390 - PGA1_c17220 0.77 -1.0 1,796,441 + PGA1_c17220 0.82 -0.6 1,796,458 + PGA1_c17220 0.84 +0.6 1,796,466 - PGA1_c17220 0.85 -2.0 1,796,503 - PGA1_c17220 0.88 +1.6 1,796,523 + -1.0
Or see this region's nucleotide sequence