Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14740 and PGA1_c14750 are separated by 2 nucleotides PGA1_c14750 and PGA1_c14760 overlap by 4 nucleotides PGA1_c14760 and PGA1_c14770 are separated by 191 nucleotides
PGA1_c14740: PGA1_c14740 - competence/damage-inducible protein CinA C-terminal domain, at 1,527,474 to 1,527,956
_c14740
PGA1_c14750: PGA1_c14750 - phosphatidylglycerophosphatase, at 1,527,959 to 1,528,465
_c14750
PGA1_c14760: PGA1_c14760 - bifunctional enzyme IspDF, at 1,528,462 to 1,529,682
_c14760
PGA1_c14770: PGA1_c14770 - tRNA-dihydrouridine synthase DusB, at 1,529,874 to 1,530,887
_c14770
Position (kb)
1528
1529
1530 Strain fitness (log2 ratio)
-2
-1
0
1 at 1527.467 kb on - strand at 1527.526 kb on - strand, within PGA1_c14740 at 1527.602 kb on + strand, within PGA1_c14740 at 1527.611 kb on + strand, within PGA1_c14740 at 1527.611 kb on + strand, within PGA1_c14740 at 1527.619 kb on - strand, within PGA1_c14740 at 1527.619 kb on - strand, within PGA1_c14740 at 1527.641 kb on + strand, within PGA1_c14740 at 1527.651 kb on + strand, within PGA1_c14740 at 1527.687 kb on + strand, within PGA1_c14740 at 1527.820 kb on - strand, within PGA1_c14740 at 1527.830 kb on - strand, within PGA1_c14740 at 1527.835 kb on + strand, within PGA1_c14740 at 1527.862 kb on - strand, within PGA1_c14740 at 1527.928 kb on + strand at 1527.944 kb on - strand at 1528.957 kb on - strand, within PGA1_c14760 at 1529.660 kb on + strand at 1529.716 kb on + strand at 1529.753 kb on - strand at 1529.805 kb on + strand at 1529.898 kb on + strand at 1530.026 kb on + strand, within PGA1_c14770 at 1530.026 kb on + strand, within PGA1_c14770 at 1530.034 kb on - strand, within PGA1_c14770 at 1530.034 kb on - strand, within PGA1_c14770 at 1530.074 kb on + strand, within PGA1_c14770 at 1530.358 kb on + strand, within PGA1_c14770 at 1530.363 kb on + strand, within PGA1_c14770 at 1530.371 kb on - strand, within PGA1_c14770 at 1530.443 kb on + strand, within PGA1_c14770 at 1530.451 kb on - strand, within PGA1_c14770 at 1530.487 kb on - strand, within PGA1_c14770 at 1530.532 kb on - strand, within PGA1_c14770 at 1530.661 kb on - strand, within PGA1_c14770
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 1,527,467 - +0.7 1,527,526 - PGA1_c14740 0.11 -1.9 1,527,602 + PGA1_c14740 0.27 +1.0 1,527,611 + PGA1_c14740 0.28 -0.0 1,527,611 + PGA1_c14740 0.28 +1.5 1,527,619 - PGA1_c14740 0.30 -0.8 1,527,619 - PGA1_c14740 0.30 +1.1 1,527,641 + PGA1_c14740 0.35 +0.0 1,527,651 + PGA1_c14740 0.37 -1.9 1,527,687 + PGA1_c14740 0.44 +0.2 1,527,820 - PGA1_c14740 0.72 -0.2 1,527,830 - PGA1_c14740 0.74 -0.0 1,527,835 + PGA1_c14740 0.75 +0.1 1,527,862 - PGA1_c14740 0.80 +1.3 1,527,928 + +1.7 1,527,944 - -0.3 1,528,957 - PGA1_c14760 0.41 -1.4 1,529,660 + -0.2 1,529,716 + +1.1 1,529,753 - +1.4 1,529,805 + +0.2 1,529,898 + +0.6 1,530,026 + PGA1_c14770 0.15 +0.0 1,530,026 + PGA1_c14770 0.15 -1.1 1,530,034 - PGA1_c14770 0.16 -0.0 1,530,034 - PGA1_c14770 0.16 +0.5 1,530,074 + PGA1_c14770 0.20 -0.3 1,530,358 + PGA1_c14770 0.48 -1.3 1,530,363 + PGA1_c14770 0.48 +0.0 1,530,371 - PGA1_c14770 0.49 +0.9 1,530,443 + PGA1_c14770 0.56 +0.4 1,530,451 - PGA1_c14770 0.57 -0.7 1,530,487 - PGA1_c14770 0.60 -0.2 1,530,532 - PGA1_c14770 0.65 +0.1 1,530,661 - PGA1_c14770 0.78 -0.7
Or see this region's nucleotide sequence