Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0140

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
138,095	+		Psest_0139	0.15	-0.6
138,096	-		Psest_0139	0.15	-0.9
138,136	+		Psest_0139	0.20	+1.4
138,136	+		Psest_0139	0.20	+0.1
138,136	+		Psest_0139	0.20	+1.0
138,137	-		Psest_0139	0.21	-0.2
138,595	+		Psest_0139	0.80	+0.4
138,595	+		Psest_0139	0.80	-1.9
138,595	+		Psest_0139	0.80	+0.1
138,595	+		Psest_0139	0.80	-0.9
138,596	-		Psest_0139	0.80	+0.8
138,596	-		Psest_0139	0.80	+1.3
138,764	+				-1.6
138,764	+				+1.0
138,765	-				-1.2
138,791	+				-0.9
138,791	+				-0.6
138,791	+				-0.1
138,791	+				-0.4
138,791	+				+5.1
138,791	+				-0.6
138,791	+				-0.6
138,791	+				+1.6
138,791	+				+0.4
138,792	-				+0.1
138,792	-				-2.6
138,792	-				+0.6
138,792	-				-1.0
138,792	-				+0.2
138,792	-				-0.2
138,792	-				-1.1
138,795	+				+0.0
138,795	+				-2.3
138,795	+				-0.6
138,795	+				+1.3
138,795	+				+0.3
138,796	-				-1.1
138,796	-				-1.5
138,796	-				-0.6
138,849	+				+0.2
138,849	+				+0.0
138,850	-				+0.3
138,850	-				-0.7
138,850	-				-0.8
138,850	-				-0.5
138,850	-				-0.1
138,943	+				+0.3
138,943	+				-2.4
138,943	+				+0.8
138,943	+				-2.1
138,943	+				-2.2
138,944	-				-1.6
138,944	-				+0.4
138,944	-				-1.2
138,944	-				-0.5
138,944	-				+0.1
138,945	+				-2.1
138,945	+				-0.2
138,945	+				-0.9
138,945	+				+0.8
138,945	+				-1.0
138,945	+				-0.5
138,945	+				-0.4
138,945	+				+0.4
138,945	+				+1.3
138,945	+				+0.2
138,945	+				-0.8
138,945	+				+1.1
138,945	+				-0.0
138,946	-				-0.7
138,946	-				-0.9
138,946	-				-2.1
138,946	-				+2.0
138,946	-				-0.3
138,946	-				+2.0
138,946	-				+0.0
138,946	-				-0.8
138,946	-				-0.6
138,946	-				+1.3
138,946	-				-1.1
138,946	-				-2.8
138,946	-				-0.6
138,946	-				-1.2
138,946	-				-1.9
138,946	-				-2.7
138,946	-				+0.3
139,146	+				+0.1
139,146	+				-0.1
139,146	+				-0.9
139,146	+				-2.1
139,146	+				-0.2
139,146	+				-0.9
139,146	+				+1.8
139,147	-				-1.4
139,147	-				-1.4
139,147	-				-0.8
139,147	-				+0.1
139,147	-				-0.3
139,147	-				+0.4
139,147	-				-2.1
139,147	-				-0.3
139,166	+				+0.6
139,166	+				-0.3
139,166	+				-0.4
139,166	+				+0.6
139,166	+				+0.0
139,167	-				-0.6
139,167	-				+0.4
139,167	-				+0.1
139,167	-				-0.4
139,167	-				-0.6
139,167	-				-0.9
139,167	-				-0.7
139,167	-				-0.2
139,167	-				-1.1
139,200	+				+0.7
139,200	+				+1.0
139,201	-				+0.8
139,209	+				+0.5
139,209	+				+0.6
139,209	+				-0.2
139,249	-		Psest_0140	0.10	+0.7
139,251	+		Psest_0140	0.10	-1.1
139,251	+		Psest_0140	0.10	+0.8
139,251	+		Psest_0140	0.10	+0.1
139,251	+		Psest_0140	0.10	+1.4
139,252	-		Psest_0140	0.10	-1.2
139,252	-		Psest_0140	0.10	-0.1
139,252	-		Psest_0140	0.10	-1.0
139,252	-		Psest_0140	0.10	-0.8
139,252	-		Psest_0140	0.10	-0.1
139,252	-		Psest_0140	0.10	-0.4
139,252	-		Psest_0140	0.10	-1.1
139,323	+		Psest_0140	0.14	-0.9
139,764	-		Psest_0140	0.35	-0.8
139,954	+		Psest_0140	0.44	-0.5
139,954	+		Psest_0140	0.44	-0.2
139,954	+		Psest_0140	0.44	-1.1
139,954	+		Psest_0140	0.44	+0.1
139,954	+		Psest_0140	0.44	+1.2
139,954	+		Psest_0140	0.44	-1.4
139,955	-		Psest_0140	0.44	-0.2
139,955	-		Psest_0140	0.44	-0.0
139,955	-		Psest_0140	0.44	+0.0
139,955	-		Psest_0140	0.44	-0.3
139,955	-		Psest_0140	0.44	+0.9
139,955	-		Psest_0140	0.44	-1.7
139,956	+		Psest_0140	0.45	+1.1
139,957	-		Psest_0140	0.45	-0.5
139,957	-		Psest_0140	0.45	+0.6
140,172	+		Psest_0140	0.55	-0.4
140,172	+		Psest_0140	0.55	-1.0
140,173	-		Psest_0140	0.55	-0.1
140,173	-		Psest_0140	0.55	-0.8
140,173	-		Psest_0140	0.55	+1.0
140,173	-		Psest_0140	0.55	-2.1
140,215	-		Psest_0140	0.57	-2.0
140,433	+		Psest_0140	0.68	-0.7
140,433	+		Psest_0140	0.68	-1.7
140,433	+		Psest_0140	0.68	-0.9
140,433	+		Psest_0140	0.68	-0.4
140,433	+		Psest_0140	0.68	-1.3
140,433	+		Psest_0140	0.68	+1.0
140,433	+		Psest_0140	0.68	-1.5
140,434	-		Psest_0140	0.68	-1.5
140,434	-		Psest_0140	0.68	+0.1
140,434	-		Psest_0140	0.68	+0.6
140,434	-		Psest_0140	0.68	-0.9
140,485	+		Psest_0140	0.70	-0.3
140,545	+		Psest_0140	0.73	-0.5
140,545	+		Psest_0140	0.73	+0.0
140,546	-		Psest_0140	0.73	-0.8
140,613	+		Psest_0140	0.76	+1.0
140,613	+		Psest_0140	0.76	-0.4
140,613	+		Psest_0140	0.76	-1.4
140,613	+		Psest_0140	0.76	-0.9
140,613	+		Psest_0140	0.76	-1.0
140,614	-		Psest_0140	0.76	-1.4
140,614	-		Psest_0140	0.76	-1.1
140,614	-		Psest_0140	0.76	-1.1
140,614	-		Psest_0140	0.76	-0.7
140,640	+		Psest_0140	0.78	-0.6
140,640	+		Psest_0140	0.78	-1.0
140,640	+		Psest_0140	0.78	-1.7
140,640	+		Psest_0140	0.78	-1.6
140,640	+		Psest_0140	0.78	-2.8
140,641	-		Psest_0140	0.78	-0.5
140,641	-		Psest_0140	0.78	+1.1
140,641	-		Psest_0140	0.78	-0.1
140,641	-		Psest_0140	0.78	-0.0
140,641	-		Psest_0140	0.78	-2.4
140,641	-		Psest_0140	0.78	-0.2
140,641	-		Psest_0140	0.78	+0.4
140,653	+		Psest_0140	0.78	-2.6
140,654	-		Psest_0140	0.78	+0.2
140,654	-		Psest_0140	0.78	-0.2
140,654	-		Psest_0140	0.78	-0.8
140,829	+		Psest_0140	0.87	+0.1
140,830	-		Psest_0140	0.87	-1.0
140,830	-		Psest_0140	0.87	-0.9
140,830	-		Psest_0140	0.87	+0.5
140,928	+				-0.4
140,928	+				+1.4
140,928	+				+0.0
140,928	+				+0.3
140,928	+				-0.8
140,928	+				+0.3
140,928	+				-0.8
140,928	+				-0.1
140,928	+				-1.5
140,928	+				-1.3
140,929	-				+1.1
140,929	-				-0.4
140,929	-				-0.9
140,929	-				-0.6
140,929	-				-2.0
140,929	-				-1.6
140,929	-				+0.4
140,929	-				-1.7
140,929	-				-0.3
141,138	+				-0.5
141,138	+				-0.3
141,138	+				+0.8
141,138	+				+0.1
141,138	+				-1.4
141,139	-				-2.4
141,139	-				-0.1
141,182	-				+1.2
141,385	+		Psest_0141	0.17	+0.4
141,386	-		Psest_0141	0.17	-0.5
141,386	-		Psest_0141	0.17	-2.6
141,610	+		Psest_0141	0.47	-0.9
141,679	+		Psest_0141	0.56	-0.7
141,714	+		Psest_0141	0.60	-0.8
141,715	-		Psest_0141	0.60	+0.3
141,715	-		Psest_0141	0.60	-1.7
141,887	+		Psest_0141	0.83	-0.3
141,968	-				-0.3
142,011	+				-1.0
142,025	+				-1.4
142,026	-				+0.4
142,026	-				+0.8
142,026	-				-0.8