Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01310

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01300 and PGA1_c01310 are separated by 127 nucleotidesPGA1_c01310 and PGA1_c01320 are separated by 261 nucleotides PGA1_c01300: PGA1_c01300 - DNA topoisomerase 4 subunit A, at 120,748 to 123,096 _c01300 PGA1_c01310: PGA1_c01310 - hypothetical protein, at 123,224 to 123,835 _c01310 PGA1_c01320: PGA1_c01320 - elongation factor Tu, at 124,097 to 125,272 _c01320 Position (kb) 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.118 kb on + strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.126 kb on - strandat 123.138 kb on + strandat 123.745 kb on + strand, within PGA1_c01310at 123.761 kb on + strand, within PGA1_c01310at 123.764 kb on - strand, within PGA1_c01310at 123.766 kb on + strand, within PGA1_c01310at 123.766 kb on + strand, within PGA1_c01310at 123.769 kb on - strand, within PGA1_c01310at 123.771 kb on + strand, within PGA1_c01310at 123.774 kb on - strandat 123.779 kb on - strandat 123.877 kb on - strandat 123.930 kb on + strandat 123.930 kb on + strandat 123.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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123,118 + -1.4
123,118 + -0.1
123,118 + -0.8
123,118 + +0.7
123,118 + -1.5
123,118 + +0.5
123,118 + -1.3
123,118 + +0.2
123,118 + -0.7
123,118 + -0.9
123,118 + -0.4
123,118 + +1.8
123,126 - +0.8
123,126 - -2.0
123,126 - -0.5
123,126 - +1.0
123,126 - -0.7
123,126 - -0.1
123,126 - -2.3
123,126 - -0.6
123,126 - -0.5
123,126 - -1.7
123,126 - -1.1
123,138 + -3.4
123,745 + PGA1_c01310 0.85 -0.6
123,761 + PGA1_c01310 0.88 -2.3
123,764 - PGA1_c01310 0.88 -0.2
123,766 + PGA1_c01310 0.89 -3.5
123,766 + PGA1_c01310 0.89 -0.5
123,769 - PGA1_c01310 0.89 -1.4
123,771 + PGA1_c01310 0.89 -1.5
123,774 - +1.2
123,779 - -0.2
123,877 - -2.0
123,930 + +0.0
123,930 + -1.5
123,970 + -0.9

Or see this region's nucleotide sequence