Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12720

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12710 and PGA1_c12720 are separated by 81 nucleotidesPGA1_c12720 and PGA1_c12730 are separated by 115 nucleotidesPGA1_c12730 and PGA1_c12740 are separated by 11 nucleotides PGA1_c12710: PGA1_c12710 - two-component system sensor histidine kinase, at 1,315,996 to 1,318,674 _c12710 PGA1_c12720: PGA1_c12720 - Flagellar motor switch protein, at 1,318,756 to 1,320,138 _c12720 PGA1_c12730: PGA1_c12730 - TIGR01244 family protein, at 1,320,254 to 1,320,703 _c12730 PGA1_c12740: PGA1_c12740 - Predicted transporter component, at 1,320,715 to 1,321,146 _c12740 Position (kb) 1318 1319 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1317.756 kb on - strand, within PGA1_c12710at 1317.876 kb on - strand, within PGA1_c12710at 1317.881 kb on + strand, within PGA1_c12710at 1317.944 kb on - strand, within PGA1_c12710at 1318.151 kb on + strand, within PGA1_c12710at 1318.328 kb on + strand, within PGA1_c12710at 1318.328 kb on + strand, within PGA1_c12710at 1318.328 kb on + strand, within PGA1_c12710at 1318.328 kb on + strand, within PGA1_c12710at 1318.328 kb on + strand, within PGA1_c12710at 1318.331 kb on - strand, within PGA1_c12710at 1318.333 kb on + strand, within PGA1_c12710at 1318.336 kb on - strand, within PGA1_c12710at 1318.336 kb on - strand, within PGA1_c12710at 1318.348 kb on + strand, within PGA1_c12710at 1318.389 kb on - strand, within PGA1_c12710at 1318.549 kb on + strandat 1318.621 kb on + strandat 1318.628 kb on - strandat 1318.628 kb on - strandat 1318.628 kb on - strandat 1318.710 kb on + strandat 1318.710 kb on + strandat 1318.711 kb on - strandat 1318.720 kb on + strandat 1318.809 kb on - strandat 1318.833 kb on + strandat 1318.841 kb on - strandat 1318.862 kb on + strandat 1318.870 kb on - strandat 1318.870 kb on - strandat 1318.871 kb on - strandat 1318.878 kb on - strandat 1318.878 kb on - strandat 1318.878 kb on - strandat 1319.089 kb on - strand, within PGA1_c12720at 1319.089 kb on - strand, within PGA1_c12720at 1319.092 kb on + strand, within PGA1_c12720at 1319.097 kb on + strand, within PGA1_c12720at 1319.100 kb on - strand, within PGA1_c12720at 1319.103 kb on + strand, within PGA1_c12720at 1319.105 kb on - strand, within PGA1_c12720at 1319.244 kb on + strand, within PGA1_c12720at 1319.252 kb on - strand, within PGA1_c12720at 1319.252 kb on - strand, within PGA1_c12720at 1319.252 kb on - strand, within PGA1_c12720at 1319.297 kb on - strand, within PGA1_c12720at 1319.314 kb on + strand, within PGA1_c12720at 1319.342 kb on + strand, within PGA1_c12720at 1319.345 kb on - strand, within PGA1_c12720at 1319.347 kb on + strand, within PGA1_c12720at 1319.350 kb on - strand, within PGA1_c12720at 1319.395 kb on - strand, within PGA1_c12720at 1319.404 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.474 kb on + strand, within PGA1_c12720at 1319.474 kb on + strand, within PGA1_c12720at 1319.516 kb on - strand, within PGA1_c12720at 1319.533 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.615 kb on - strand, within PGA1_c12720at 1319.615 kb on - strand, within PGA1_c12720at 1319.630 kb on + strand, within PGA1_c12720at 1319.671 kb on + strand, within PGA1_c12720at 1319.671 kb on + strand, within PGA1_c12720at 1319.679 kb on - strand, within PGA1_c12720at 1319.716 kb on - strand, within PGA1_c12720at 1319.746 kb on - strand, within PGA1_c12720at 1319.809 kb on - strand, within PGA1_c12720at 1319.809 kb on - strand, within PGA1_c12720at 1319.819 kb on - strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.847 kb on - strand, within PGA1_c12720at 1319.848 kb on + strand, within PGA1_c12720at 1319.882 kb on - strand, within PGA1_c12720at 1320.013 kb on - strandat 1320.020 kb on - strandat 1320.049 kb on + strandat 1320.049 kb on + strandat 1320.050 kb on + strandat 1320.109 kb on - strandat 1320.115 kb on + strandat 1320.123 kb on - strandat 1320.123 kb on - strandat 1320.127 kb on + strandat 1320.133 kb on + strandat 1320.214 kb on + strandat 1320.222 kb on - strandat 1320.274 kb on + strandat 1320.281 kb on - strandat 1320.315 kb on + strand, within PGA1_c12730at 1320.423 kb on + strand, within PGA1_c12730at 1320.441 kb on - strand, within PGA1_c12730at 1320.736 kb on + strandat 1320.882 kb on + strand, within PGA1_c12740at 1320.926 kb on - strand, within PGA1_c12740at 1320.970 kb on - strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.065 kb on - strand, within PGA1_c12740at 1321.065 kb on - strand, within PGA1_c12740at 1321.088 kb on + strand, within PGA1_c12740at 1321.098 kb on + strand, within PGA1_c12740

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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1,317,756 - PGA1_c12710 0.66 -1.5
1,317,876 - PGA1_c12710 0.70 +0.1
1,317,881 + PGA1_c12710 0.70 -0.8
1,317,944 - PGA1_c12710 0.73 +0.7
1,318,151 + PGA1_c12710 0.80 +0.9
1,318,328 + PGA1_c12710 0.87 -0.7
1,318,328 + PGA1_c12710 0.87 +0.2
1,318,328 + PGA1_c12710 0.87 -1.7
1,318,328 + PGA1_c12710 0.87 -0.7
1,318,328 + PGA1_c12710 0.87 +0.5
1,318,331 - PGA1_c12710 0.87 +1.6
1,318,333 + PGA1_c12710 0.87 -0.9
1,318,336 - PGA1_c12710 0.87 +1.5
1,318,336 - PGA1_c12710 0.87 -0.9
1,318,348 + PGA1_c12710 0.88 +0.2
1,318,389 - PGA1_c12710 0.89 +1.5
1,318,549 + +0.3
1,318,621 + +0.3
1,318,628 - -1.6
1,318,628 - -0.6
1,318,628 - -2.0
1,318,710 + +0.1
1,318,710 + -0.1
1,318,711 - -0.7
1,318,720 + -1.3
1,318,809 - -1.5
1,318,833 + -0.5
1,318,841 - -0.9
1,318,862 + -1.9
1,318,870 - -0.9
1,318,870 - -1.3
1,318,871 - -2.6
1,318,878 - -1.9
1,318,878 - -2.6
1,318,878 - +0.5
1,319,089 - PGA1_c12720 0.24 -0.3
1,319,089 - PGA1_c12720 0.24 +1.0
1,319,092 + PGA1_c12720 0.24 -1.5
1,319,097 + PGA1_c12720 0.25 +1.5
1,319,100 - PGA1_c12720 0.25 -2.3
1,319,103 + PGA1_c12720 0.25 -1.8
1,319,105 - PGA1_c12720 0.25 +1.1
1,319,244 + PGA1_c12720 0.35 -0.9
1,319,252 - PGA1_c12720 0.36 -1.7
1,319,252 - PGA1_c12720 0.36 -1.5
1,319,252 - PGA1_c12720 0.36 -1.2
1,319,297 - PGA1_c12720 0.39 +1.1
1,319,314 + PGA1_c12720 0.40 -0.9
1,319,342 + PGA1_c12720 0.42 -2.7
1,319,345 - PGA1_c12720 0.43 -2.5
1,319,347 + PGA1_c12720 0.43 -2.2
1,319,350 - PGA1_c12720 0.43 -0.7
1,319,395 - PGA1_c12720 0.46 -0.5
1,319,404 + PGA1_c12720 0.47 -0.3
1,319,464 + PGA1_c12720 0.51 -1.7
1,319,464 + PGA1_c12720 0.51 -0.6
1,319,464 + PGA1_c12720 0.51 -1.9
1,319,464 + PGA1_c12720 0.51 -2.0
1,319,474 + PGA1_c12720 0.52 -1.6
1,319,474 + PGA1_c12720 0.52 -0.9
1,319,516 - PGA1_c12720 0.55 -3.4
1,319,533 + PGA1_c12720 0.56 +0.1
1,319,607 + PGA1_c12720 0.62 +0.4
1,319,607 + PGA1_c12720 0.62 -1.6
1,319,607 + PGA1_c12720 0.62 -1.5
1,319,615 - PGA1_c12720 0.62 -0.5
1,319,615 - PGA1_c12720 0.62 +0.1
1,319,630 + PGA1_c12720 0.63 +0.6
1,319,671 + PGA1_c12720 0.66 -1.3
1,319,671 + PGA1_c12720 0.66 -1.7
1,319,679 - PGA1_c12720 0.67 -2.0
1,319,716 - PGA1_c12720 0.69 -1.1
1,319,746 - PGA1_c12720 0.72 -1.7
1,319,809 - PGA1_c12720 0.76 -2.6
1,319,809 - PGA1_c12720 0.76 -1.7
1,319,819 - PGA1_c12720 0.77 -0.3
1,319,829 + PGA1_c12720 0.78 -1.2
1,319,829 + PGA1_c12720 0.78 -1.7
1,319,829 + PGA1_c12720 0.78 -0.9
1,319,847 - PGA1_c12720 0.79 -0.6
1,319,848 + PGA1_c12720 0.79 -1.7
1,319,882 - PGA1_c12720 0.81 -1.3
1,320,013 - -2.3
1,320,020 - -0.7
1,320,049 + -0.8
1,320,049 + -0.2
1,320,050 + -0.3
1,320,109 - +0.3
1,320,115 + -1.7
1,320,123 - +0.2
1,320,123 - -1.2
1,320,127 + -1.3
1,320,133 + -0.3
1,320,214 + -0.2
1,320,222 - -0.9
1,320,274 + -1.5
1,320,281 - -0.4
1,320,315 + PGA1_c12730 0.14 +0.4
1,320,423 + PGA1_c12730 0.38 -2.0
1,320,441 - PGA1_c12730 0.42 -2.8
1,320,736 + +1.9
1,320,882 + PGA1_c12740 0.39 -1.5
1,320,926 - PGA1_c12740 0.49 +1.4
1,320,970 - PGA1_c12740 0.59 +1.3
1,321,057 + PGA1_c12740 0.79 -1.9
1,321,057 + PGA1_c12740 0.79 -1.0
1,321,057 + PGA1_c12740 0.79 -0.6
1,321,057 + PGA1_c12740 0.79 +0.4
1,321,065 - PGA1_c12740 0.81 -0.2
1,321,065 - PGA1_c12740 0.81 +1.1
1,321,088 + PGA1_c12740 0.86 +0.1
1,321,098 + PGA1_c12740 0.89 -1.0

Or see this region's nucleotide sequence