Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12520 and PGA1_c12530 are separated by 140 nucleotides PGA1_c12530 and PGA1_c12540 are separated by 93 nucleotides PGA1_c12540 and PGA1_c12550 are separated by 25 nucleotides PGA1_c12550 and PGA1_c12560 are separated by 172 nucleotides
PGA1_c12520: PGA1_c12520 - ATP-dependent Clp protease proteolytic subunit, at 1,300,572 to 1,301,204
_c12520
PGA1_c12530: PGA1_c12530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,301,345 to 1,302,613
_c12530
PGA1_c12540: PGA1_c12540 - Putative translation initiation inhibitor, yjgF family, at 1,302,707 to 1,303,066
_c12540
PGA1_c12550: PGA1_c12550 - hypothetical protein, at 1,303,092 to 1,303,379
_c12550
PGA1_c12560: PGA1_c12560 - putative NADH ubiquinone oxidoreductase subunit NDUFA12, at 1,303,552 to 1,303,938
_c12560
Position (kb)
1301
1302
1303 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1300.352 kb on + strand at 1300.355 kb on - strand at 1300.355 kb on - strand at 1300.443 kb on + strand at 1300.443 kb on + strand at 1300.448 kb on + strand at 1300.448 kb on + strand at 1300.453 kb on + strand at 1300.453 kb on + strand at 1300.460 kb on + strand at 1300.492 kb on + strand at 1300.492 kb on + strand at 1300.500 kb on - strand at 1300.512 kb on + strand at 1300.513 kb on + strand at 1301.199 kb on - strand at 1301.203 kb on + strand at 1301.224 kb on + strand at 1301.497 kb on + strand, within PGA1_c12530 at 1301.584 kb on + strand, within PGA1_c12530 at 1301.592 kb on - strand, within PGA1_c12530 at 1301.624 kb on + strand, within PGA1_c12530 at 1301.875 kb on + strand, within PGA1_c12530 at 1302.322 kb on + strand, within PGA1_c12530 at 1302.337 kb on + strand, within PGA1_c12530 at 1302.444 kb on + strand, within PGA1_c12530 at 1302.543 kb on - strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.614 kb on + strand at 1302.621 kb on + strand at 1302.621 kb on + strand at 1302.622 kb on - strand at 1302.622 kb on - strand at 1302.622 kb on - strand at 1302.622 kb on - strand at 1302.622 kb on - strand at 1302.622 kb on - strand at 1302.709 kb on + strand at 1302.780 kb on + strand, within PGA1_c12540 at 1302.793 kb on + strand, within PGA1_c12540 at 1302.801 kb on + strand, within PGA1_c12540 at 1302.801 kb on + strand, within PGA1_c12540 at 1302.801 kb on + strand, within PGA1_c12540 at 1302.801 kb on + strand, within PGA1_c12540 at 1302.809 kb on - strand, within PGA1_c12540 at 1302.821 kb on - strand, within PGA1_c12540 at 1302.832 kb on + strand, within PGA1_c12540 at 1302.832 kb on + strand, within PGA1_c12540 at 1302.908 kb on + strand, within PGA1_c12540 at 1302.966 kb on + strand, within PGA1_c12540 at 1302.974 kb on - strand, within PGA1_c12540 at 1303.069 kb on - strand at 1303.089 kb on - strand at 1303.184 kb on - strand, within PGA1_c12550 at 1303.193 kb on + strand, within PGA1_c12550 at 1303.239 kb on + strand, within PGA1_c12550 at 1303.254 kb on - strand, within PGA1_c12550 at 1303.343 kb on + strand, within PGA1_c12550 at 1303.343 kb on + strand, within PGA1_c12550 at 1303.480 kb on - strand at 1303.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 1,300,352 + -0.2 1,300,355 - -3.5 1,300,355 - +1.3 1,300,443 + -0.5 1,300,443 + +1.1 1,300,448 + +1.1 1,300,448 + +0.0 1,300,453 + +0.5 1,300,453 + +0.9 1,300,460 + +1.4 1,300,492 + -1.5 1,300,492 + -1.5 1,300,500 - -1.5 1,300,512 + +1.4 1,300,513 + +0.1 1,301,199 - -2.2 1,301,203 + -0.3 1,301,224 + +0.6 1,301,497 + PGA1_c12530 0.12 -0.5 1,301,584 + PGA1_c12530 0.19 -2.5 1,301,592 - PGA1_c12530 0.19 -1.9 1,301,624 + PGA1_c12530 0.22 +0.5 1,301,875 + PGA1_c12530 0.42 -0.9 1,302,322 + PGA1_c12530 0.77 -0.5 1,302,337 + PGA1_c12530 0.78 -1.7 1,302,444 + PGA1_c12530 0.87 +0.1 1,302,543 - -1.2 1,302,614 + -0.1 1,302,614 + -1.9 1,302,614 + +0.7 1,302,614 + -0.1 1,302,614 + -2.4 1,302,614 + -1.1 1,302,614 + +0.1 1,302,621 + +1.1 1,302,621 + -1.0 1,302,622 - -2.5 1,302,622 - +0.0 1,302,622 - +0.9 1,302,622 - +0.9 1,302,622 - +0.6 1,302,622 - +0.5 1,302,709 + +0.0 1,302,780 + PGA1_c12540 0.20 +0.7 1,302,793 + PGA1_c12540 0.24 -0.1 1,302,801 + PGA1_c12540 0.26 -1.9 1,302,801 + PGA1_c12540 0.26 +0.7 1,302,801 + PGA1_c12540 0.26 +0.4 1,302,801 + PGA1_c12540 0.26 +0.7 1,302,809 - PGA1_c12540 0.28 -0.2 1,302,821 - PGA1_c12540 0.32 -0.9 1,302,832 + PGA1_c12540 0.35 +0.4 1,302,832 + PGA1_c12540 0.35 -0.1 1,302,908 + PGA1_c12540 0.56 -1.7 1,302,966 + PGA1_c12540 0.72 -1.3 1,302,974 - PGA1_c12540 0.74 +0.9 1,303,069 - +0.1 1,303,089 - -0.0 1,303,184 - PGA1_c12550 0.32 -0.1 1,303,193 + PGA1_c12550 0.35 -1.1 1,303,239 + PGA1_c12550 0.51 -0.0 1,303,254 - PGA1_c12550 0.56 -0.4 1,303,343 + PGA1_c12550 0.87 +0.7 1,303,343 + PGA1_c12550 0.87 +2.0 1,303,480 - +0.7 1,303,493 - -1.0
Or see this region's nucleotide sequence