Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11160 and PGA1_c11170 overlap by 8 nucleotides PGA1_c11170 and PGA1_c11180 overlap by 1 nucleotides PGA1_c11180 and PGA1_c11190 are separated by 103 nucleotides
PGA1_c11160: PGA1_c11160 - putative beta-hexosaminidase, at 1,154,406 to 1,155,410
_c11160
PGA1_c11170: PGA1_c11170 - segregation and condensation protein A, at 1,155,403 to 1,156,194
_c11170
PGA1_c11180: PGA1_c11180 - segregation and condensation protein B, at 1,156,194 to 1,156,856
_c11180
PGA1_c11190: PGA1_c11190 - hypothetical protein, at 1,156,960 to 1,157,172
_c11190
Position (kb) 1155
1156
1157 Strain fitness (log2 ratio) -1
0
1
2 at 1154.416 kb on - strand at 1154.416 kb on - strand at 1154.486 kb on + strand at 1154.488 kb on - strand at 1154.536 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.556 kb on - strand, within PGA1_c11160 at 1154.588 kb on - strand, within PGA1_c11160 at 1154.829 kb on + strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.924 kb on - strand, within PGA1_c11160 at 1155.077 kb on + strand, within PGA1_c11160 at 1155.398 kb on + strand at 1155.415 kb on + strand at 1155.417 kb on + strand at 1155.839 kb on - strand, within PGA1_c11170 at 1156.024 kb on - strand, within PGA1_c11170 at 1156.060 kb on - strand, within PGA1_c11170 at 1156.084 kb on + strand, within PGA1_c11170 at 1156.208 kb on + strand at 1156.230 kb on + strand at 1156.447 kb on + strand, within PGA1_c11180 at 1156.544 kb on + strand, within PGA1_c11180 at 1156.590 kb on - strand, within PGA1_c11180 at 1156.834 kb on + strand at 1156.929 kb on - strand at 1156.929 kb on - strand at 1156.988 kb on - strand, within PGA1_c11190 at 1156.990 kb on - strand, within PGA1_c11190 at 1156.999 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 1,154,416 - +1.0 1,154,416 - +1.0 1,154,486 + +0.0 1,154,488 - +1.0 1,154,536 + PGA1_c11160 0.13 +0.0 1,154,548 + PGA1_c11160 0.14 -1.0 1,154,548 + PGA1_c11160 0.14 +1.0 1,154,556 - PGA1_c11160 0.15 +1.0 1,154,588 - PGA1_c11160 0.18 +1.0 1,154,829 + PGA1_c11160 0.42 +0.0 1,154,873 - PGA1_c11160 0.46 -1.6 1,154,873 - PGA1_c11160 0.46 +1.0 1,154,924 - PGA1_c11160 0.52 +0.0 1,155,077 + PGA1_c11160 0.67 +1.0 1,155,398 + -1.5 1,155,415 + +1.0 1,155,417 + +0.0 1,155,839 - PGA1_c11170 0.55 +0.0 1,156,024 - PGA1_c11170 0.78 +0.0 1,156,060 - PGA1_c11170 0.83 -0.5 1,156,084 + PGA1_c11170 0.86 -1.0 1,156,208 + +1.0 1,156,230 + +0.5 1,156,447 + PGA1_c11180 0.38 +2.0 1,156,544 + PGA1_c11180 0.53 -0.5 1,156,590 - PGA1_c11180 0.60 +1.0 1,156,834 + +0.0 1,156,929 - +1.0 1,156,929 - -0.3 1,156,988 - PGA1_c11190 0.13 +0.0 1,156,990 - PGA1_c11190 0.14 -0.5 1,156,999 + PGA1_c11190 0.18 -0.8 1,157,037 + PGA1_c11190 0.36 -1.3 1,157,037 + PGA1_c11190 0.36 +2.4
Or see this region's nucleotide sequence