Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1038

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1036 and Psest_1037 are separated by 2 nucleotidesPsest_1037 and Psest_1038 are separated by 76 nucleotidesPsest_1038 and Psest_1039 are separated by 153 nucleotides Psest_1036: Psest_1036 - acetolactate synthase, large subunit, biosynthetic type, at 1,121,522 to 1,123,246 _1036 Psest_1037: Psest_1037 - acetolactate synthase, small subunit, at 1,123,249 to 1,123,740 _1037 Psest_1038: Psest_1038 - ketol-acid reductoisomerase, at 1,123,817 to 1,124,833 _1038 Psest_1039: Psest_1039 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,124,987 to 1,125,826 _1039 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1123.512 kb on + strand, within Psest_1037at 1123.512 kb on + strand, within Psest_1037at 1123.596 kb on + strand, within Psest_1037at 1123.608 kb on + strand, within Psest_1037at 1123.727 kb on + strandat 1123.734 kb on + strandat 1123.734 kb on + strandat 1123.734 kb on + strandat 1123.734 kb on + strandat 1123.735 kb on - strandat 1123.735 kb on - strandat 1123.738 kb on + strandat 1123.747 kb on + strandat 1124.902 kb on + strandat 1124.962 kb on + strandat 1124.962 kb on + strandat 1124.962 kb on + strandat 1124.971 kb on + strandat 1124.971 kb on + strandat 1124.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,123,512 + Psest_1037 0.53 -2.2
1,123,512 + Psest_1037 0.53 -3.1
1,123,596 + Psest_1037 0.71 -2.4
1,123,608 + Psest_1037 0.73 -2.7
1,123,727 + -2.0
1,123,734 + -1.2
1,123,734 + +1.9
1,123,734 + +0.8
1,123,734 + -0.0
1,123,735 - +0.1
1,123,735 - -0.2
1,123,738 + -2.1
1,123,747 + -1.3
1,124,902 + +1.5
1,124,962 + -1.2
1,124,962 + +0.3
1,124,962 + -1.7
1,124,971 + -1.1
1,124,971 + -2.1
1,124,971 + -1.1

Or see this region's nucleotide sequence