Strain Fitness in Dechlorosoma suillum PS around Dsui_3464

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3462 and Dsui_3463 are separated by 4 nucleotidesDsui_3463 and Dsui_3464 are separated by 2 nucleotidesDsui_3464 and Dsui_3465 are separated by 143 nucleotides Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214 _3462 Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037 _3463 Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831 _3464 Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807 _3465 Position (kb) 3727 3728Strain fitness (log2 ratio) -1 0 1 2at 3726.049 kb on + strand, within Dsui_3462at 3726.057 kb on - strandat 3726.062 kb on - strand, within Dsui_3462at 3726.187 kb on + strandat 3726.246 kb on - strandat 3726.326 kb on + strand, within Dsui_3463at 3726.329 kb on - strand, within Dsui_3463at 3726.337 kb on + strand, within Dsui_3463at 3726.454 kb on + strand, within Dsui_3463at 3726.501 kb on - strand, within Dsui_3463at 3726.538 kb on + strand, within Dsui_3463at 3726.548 kb on + strand, within Dsui_3463at 3726.556 kb on + strand, within Dsui_3463at 3726.621 kb on + strand, within Dsui_3463at 3726.723 kb on - strandat 3726.795 kb on + strand, within Dsui_3463at 3726.804 kb on - strand, within Dsui_3463at 3726.949 kb on + strand, within Dsui_3463at 3727.026 kb on + strandat 3727.104 kb on - strandat 3727.578 kb on + strand, within Dsui_3464at 3727.620 kb on + strand, within Dsui_3464at 3727.632 kb on + strand, within Dsui_3464at 3727.638 kb on + strandat 3727.665 kb on + strand, within Dsui_3464at 3727.680 kb on - strand, within Dsui_3464at 3727.711 kb on - strand, within Dsui_3464at 3727.752 kb on + strandat 3727.789 kb on + strandat 3727.927 kb on - strandat 3728.253 kb on + strand, within Dsui_3465at 3728.372 kb on + strand, within Dsui_3465at 3728.393 kb on - strandat 3728.401 kb on - strand, within Dsui_3465at 3728.419 kb on + strandat 3728.428 kb on + strandat 3728.546 kb on + strand, within Dsui_3465

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,726,049 + Dsui_3462 0.83 +1.1
3,726,057 - -0.1
3,726,062 - Dsui_3462 0.84 +0.9
3,726,187 + +0.2
3,726,246 - +1.1
3,726,326 + Dsui_3463 0.13 +1.4
3,726,329 - Dsui_3463 0.13 -0.3
3,726,337 + Dsui_3463 0.14 +1.0
3,726,454 + Dsui_3463 0.29 -0.4
3,726,501 - Dsui_3463 0.34 -0.6
3,726,538 + Dsui_3463 0.39 +0.2
3,726,548 + Dsui_3463 0.40 +0.9
3,726,556 + Dsui_3463 0.41 +0.7
3,726,621 + Dsui_3463 0.49 -0.7
3,726,723 - +2.5
3,726,795 + Dsui_3463 0.70 +0.7
3,726,804 - Dsui_3463 0.71 +0.0
3,726,949 + Dsui_3463 0.89 -0.0
3,727,026 + -0.5
3,727,104 - +1.3
3,727,578 + Dsui_3464 0.68 -0.7
3,727,620 + Dsui_3464 0.73 +0.2
3,727,632 + Dsui_3464 0.75 -0.3
3,727,638 + +1.2
3,727,665 + Dsui_3464 0.79 +0.4
3,727,680 - Dsui_3464 0.81 -1.6
3,727,711 - Dsui_3464 0.85 +0.9
3,727,752 + -0.4
3,727,789 + -0.3
3,727,927 - +0.5
3,728,253 + Dsui_3465 0.15 -0.8
3,728,372 + Dsui_3465 0.22 -0.4
3,728,393 - +2.5
3,728,401 - Dsui_3465 0.23 -1.4
3,728,419 + +0.5
3,728,428 + +0.2
3,728,546 + Dsui_3465 0.31 -0.6

Or see this region's nucleotide sequence