Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3426 and Dsui_3427 are separated by 138 nucleotides Dsui_3427 and Dsui_3428 are separated by 118 nucleotides Dsui_3428 and Dsui_3429 are separated by 219 nucleotides
Dsui_3426: Dsui_3426 - transcriptional regulator, at 3,677,023 to 3,677,925
_3426
Dsui_3427: Dsui_3427 - nicotinamidase-like amidase, at 3,678,064 to 3,678,588
_3427
Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666
_3428
Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043
_3429
Position (kb)
3678
3679
3680 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3677.772 kb on - strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.149 kb on + strand, within Dsui_3427 at 3678.191 kb on + strand at 3678.196 kb on + strand at 3678.199 kb on - strand at 3678.251 kb on - strand at 3678.286 kb on - strand at 3678.302 kb on - strand at 3678.302 kb on - strand, within Dsui_3427 at 3678.460 kb on - strand at 3678.500 kb on + strand at 3678.557 kb on + strand at 3678.836 kb on - strand at 3678.876 kb on + strand, within Dsui_3428 at 3678.936 kb on - strand, within Dsui_3428 at 3678.963 kb on - strand at 3678.972 kb on + strand, within Dsui_3428 at 3679.111 kb on + strand at 3679.197 kb on + strand, within Dsui_3428 at 3679.295 kb on + strand at 3679.295 kb on + strand, within Dsui_3428 at 3679.303 kb on - strand at 3679.409 kb on + strand, within Dsui_3428 at 3679.423 kb on - strand at 3679.441 kb on - strand at 3679.608 kb on + strand at 3679.609 kb on + strand at 3679.661 kb on + strand at 3679.730 kb on + strand at 3679.787 kb on - strand at 3679.832 kb on - strand at 3679.857 kb on - strand at 3679.870 kb on + strand at 3679.878 kb on - strand at 3679.944 kb on - strand at 3679.956 kb on - strand at 3680.005 kb on + strand, within Dsui_3429 at 3680.005 kb on + strand, within Dsui_3429 at 3680.143 kb on + strand, within Dsui_3429 at 3680.347 kb on + strand, within Dsui_3429 at 3680.592 kb on - strand, within Dsui_3429 at 3680.603 kb on - strand, within Dsui_3429
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,677,772 - -0.1 3,678,062 + +1.5 3,678,062 + +1.5 3,678,062 + -0.7 3,678,062 + -0.7 3,678,062 + +1.5 3,678,062 + -1.0 3,678,062 + +2.5 3,678,062 + +1.5 3,678,062 + +1.5 3,678,149 + Dsui_3427 0.16 +0.8 3,678,191 + +1.5 3,678,196 + +0.5 3,678,199 - +1.9 3,678,251 - +0.5 3,678,286 - +1.5 3,678,302 - +3.1 3,678,302 - Dsui_3427 0.45 -1.0 3,678,460 - +0.5 3,678,500 + +0.5 3,678,557 + +1.5 3,678,836 - +0.5 3,678,876 + Dsui_3428 0.18 +0.0 3,678,936 - Dsui_3428 0.24 -0.3 3,678,963 - +0.5 3,678,972 + Dsui_3428 0.28 +1.5 3,679,111 + -0.3 3,679,197 + Dsui_3428 0.51 +0.2 3,679,295 + +0.2 3,679,295 + Dsui_3428 0.61 -1.8 3,679,303 - +1.5 3,679,409 + Dsui_3428 0.73 -0.5 3,679,423 - +1.5 3,679,441 - +1.5 3,679,608 + +0.3 3,679,609 + -0.5 3,679,661 + +1.5 3,679,730 + +0.5 3,679,787 - +0.5 3,679,832 - +3.5 3,679,857 - +1.5 3,679,870 + +0.3 3,679,878 - +1.5 3,679,944 - +3.1 3,679,956 - +0.9 3,680,005 + Dsui_3429 0.10 -0.7 3,680,005 + Dsui_3429 0.10 +0.5 3,680,143 + Dsui_3429 0.22 +0.9 3,680,347 + Dsui_3429 0.40 +0.8 3,680,592 - Dsui_3429 0.61 +0.5 3,680,603 - Dsui_3429 0.62 +2.9
Or see this region's nucleotide sequence