Strain Fitness in Dechlorosoma suillum PS around Dsui_3428

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3426 and Dsui_3427 are separated by 138 nucleotidesDsui_3427 and Dsui_3428 are separated by 118 nucleotidesDsui_3428 and Dsui_3429 are separated by 219 nucleotides Dsui_3426: Dsui_3426 - transcriptional regulator, at 3,677,023 to 3,677,925 _3426 Dsui_3427: Dsui_3427 - nicotinamidase-like amidase, at 3,678,064 to 3,678,588 _3427 Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666 _3428 Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043 _3429 Position (kb) 3678 3679 3680Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3677.772 kb on - strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.149 kb on + strand, within Dsui_3427at 3678.191 kb on + strandat 3678.196 kb on + strandat 3678.199 kb on - strandat 3678.251 kb on - strandat 3678.286 kb on - strandat 3678.302 kb on - strandat 3678.302 kb on - strand, within Dsui_3427at 3678.460 kb on - strandat 3678.500 kb on + strandat 3678.557 kb on + strandat 3678.836 kb on - strandat 3678.876 kb on + strand, within Dsui_3428at 3678.936 kb on - strand, within Dsui_3428at 3678.963 kb on - strandat 3678.972 kb on + strand, within Dsui_3428at 3679.111 kb on + strandat 3679.197 kb on + strand, within Dsui_3428at 3679.295 kb on + strandat 3679.295 kb on + strand, within Dsui_3428at 3679.303 kb on - strandat 3679.409 kb on + strand, within Dsui_3428at 3679.423 kb on - strandat 3679.441 kb on - strandat 3679.608 kb on + strandat 3679.609 kb on + strandat 3679.661 kb on + strandat 3679.730 kb on + strandat 3679.787 kb on - strandat 3679.832 kb on - strandat 3679.857 kb on - strandat 3679.870 kb on + strandat 3679.878 kb on - strandat 3679.944 kb on - strandat 3679.956 kb on - strandat 3680.005 kb on + strand, within Dsui_3429at 3680.005 kb on + strand, within Dsui_3429at 3680.143 kb on + strand, within Dsui_3429at 3680.347 kb on + strand, within Dsui_3429at 3680.592 kb on - strand, within Dsui_3429at 3680.603 kb on - strand, within Dsui_3429

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,677,772 - -0.1
3,678,062 + +1.5
3,678,062 + +1.5
3,678,062 + -0.7
3,678,062 + -0.7
3,678,062 + +1.5
3,678,062 + -1.0
3,678,062 + +2.5
3,678,062 + +1.5
3,678,062 + +1.5
3,678,149 + Dsui_3427 0.16 +0.8
3,678,191 + +1.5
3,678,196 + +0.5
3,678,199 - +1.9
3,678,251 - +0.5
3,678,286 - +1.5
3,678,302 - +3.1
3,678,302 - Dsui_3427 0.45 -1.0
3,678,460 - +0.5
3,678,500 + +0.5
3,678,557 + +1.5
3,678,836 - +0.5
3,678,876 + Dsui_3428 0.18 +0.0
3,678,936 - Dsui_3428 0.24 -0.3
3,678,963 - +0.5
3,678,972 + Dsui_3428 0.28 +1.5
3,679,111 + -0.3
3,679,197 + Dsui_3428 0.51 +0.2
3,679,295 + +0.2
3,679,295 + Dsui_3428 0.61 -1.8
3,679,303 - +1.5
3,679,409 + Dsui_3428 0.73 -0.5
3,679,423 - +1.5
3,679,441 - +1.5
3,679,608 + +0.3
3,679,609 + -0.5
3,679,661 + +1.5
3,679,730 + +0.5
3,679,787 - +0.5
3,679,832 - +3.5
3,679,857 - +1.5
3,679,870 + +0.3
3,679,878 - +1.5
3,679,944 - +3.1
3,679,956 - +0.9
3,680,005 + Dsui_3429 0.10 -0.7
3,680,005 + Dsui_3429 0.10 +0.5
3,680,143 + Dsui_3429 0.22 +0.9
3,680,347 + Dsui_3429 0.40 +0.8
3,680,592 - Dsui_3429 0.61 +0.5
3,680,603 - Dsui_3429 0.62 +2.9

Or see this region's nucleotide sequence