Strain Fitness in Dechlorosoma suillum PS around Dsui_3327

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3326 and Dsui_3327 are separated by 123 nucleotidesDsui_3327 and Dsui_3328 are separated by 102 nucleotidesDsui_3328 and Dsui_3329 are separated by 242 nucleotides Dsui_3326: Dsui_3326 - protein-export membrane protein, SecD/SecF family, at 3,566,461 to 3,567,408 _3326 Dsui_3327: Dsui_3327 - cytochrome b, at 3,567,532 to 3,568,248 _3327 Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821 _3328 Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381 _3329 Position (kb) 3567 3568 3569Strain fitness (log2 ratio) -1 0 1at 3567.445 kb on + strandat 3567.596 kb on + strandat 3567.659 kb on + strand, within Dsui_3327at 3567.741 kb on + strand, within Dsui_3327at 3567.860 kb on - strand, within Dsui_3327at 3567.962 kb on - strand, within Dsui_3327at 3568.049 kb on + strand, within Dsui_3327at 3568.117 kb on - strandat 3568.252 kb on - strandat 3568.305 kb on + strandat 3568.349 kb on + strandat 3568.369 kb on - strandat 3568.424 kb on + strand, within Dsui_3328at 3568.526 kb on + strand, within Dsui_3328at 3568.568 kb on - strand, within Dsui_3328at 3568.568 kb on - strand, within Dsui_3328at 3568.590 kb on + strand, within Dsui_3328at 3568.653 kb on - strand, within Dsui_3328at 3568.663 kb on - strand, within Dsui_3328at 3568.686 kb on + strand, within Dsui_3328at 3568.748 kb on - strand, within Dsui_3328at 3568.780 kb on - strandat 3568.804 kb on - strandat 3568.804 kb on - strandat 3568.810 kb on - strandat 3568.861 kb on + strandat 3568.905 kb on + strandat 3569.079 kb on - strandat 3569.095 kb on + strandat 3569.174 kb on + strand, within Dsui_3329at 3569.230 kb on + strand, within Dsui_3329

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,567,445 + +0.8
3,567,596 + +0.5
3,567,659 + Dsui_3327 0.18 -0.1
3,567,741 + Dsui_3327 0.29 +0.1
3,567,860 - Dsui_3327 0.46 +0.6
3,567,962 - Dsui_3327 0.60 -0.0
3,568,049 + Dsui_3327 0.72 -0.4
3,568,117 - +0.6
3,568,252 - +0.5
3,568,305 + +0.3
3,568,349 + -0.9
3,568,369 - -0.1
3,568,424 + Dsui_3328 0.15 -0.6
3,568,526 + Dsui_3328 0.37 -0.8
3,568,568 - Dsui_3328 0.46 +0.6
3,568,568 - Dsui_3328 0.46 +1.5
3,568,590 + Dsui_3328 0.51 +0.9
3,568,653 - Dsui_3328 0.64 -0.1
3,568,663 - Dsui_3328 0.66 +0.1
3,568,686 + Dsui_3328 0.71 +1.5
3,568,748 - Dsui_3328 0.84 +0.7
3,568,780 - +0.5
3,568,804 - +0.4
3,568,804 - -0.9
3,568,810 - -0.2
3,568,861 + -0.0
3,568,905 + +0.3
3,569,079 - +0.3
3,569,095 + +0.8
3,569,174 + Dsui_3329 0.35 +0.2
3,569,230 + Dsui_3329 0.52 +0.5

Or see this region's nucleotide sequence