Strain Fitness in Dechlorosoma suillum PS around Dsui_3268

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3267 and Dsui_3268 are separated by 397 nucleotidesDsui_3268 and Dsui_3269 are separated by 103 nucleotidesDsui_3269 and Dsui_3270 are separated by 71 nucleotides Dsui_3267: Dsui_3267 - biopolymer transport protein, at 3,505,809 to 3,506,414 _3267 Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212 _3268 Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903 _3269 Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652 _3270 Position (kb) 3506 3507 3508 3509Strain fitness (log2 ratio) -1 0 1 2 3at 3506.576 kb on + strandat 3506.576 kb on + strandat 3506.661 kb on - strandat 3506.704 kb on - strandat 3506.769 kb on + strandat 3506.777 kb on - strandat 3506.777 kb on - strandat 3506.777 kb on - strandat 3506.778 kb on - strandat 3506.817 kb on + strandat 3506.817 kb on + strandat 3506.817 kb on + strandat 3506.817 kb on + strandat 3506.825 kb on - strandat 3506.957 kb on - strandat 3507.028 kb on + strand, within Dsui_3268at 3507.068 kb on - strandat 3507.126 kb on - strandat 3507.237 kb on + strand, within Dsui_3268at 3507.383 kb on + strand, within Dsui_3268at 3507.387 kb on + strand, within Dsui_3268at 3507.462 kb on - strandat 3507.521 kb on + strandat 3507.728 kb on - strandat 3507.826 kb on - strand, within Dsui_3268at 3507.826 kb on - strand, within Dsui_3268at 3507.854 kb on + strand, within Dsui_3268at 3507.963 kb on + strand, within Dsui_3268at 3508.263 kb on + strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.275 kb on + strandat 3508.994 kb on + strandat 3508.999 kb on + strandat 3509.001 kb on - strandat 3509.002 kb on - strandat 3509.106 kb on - strandat 3509.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,506,576 + +0.1
3,506,576 + +1.4
3,506,661 - +3.4
3,506,704 - +1.8
3,506,769 + +2.4
3,506,777 - +3.4
3,506,777 - +2.4
3,506,777 - +0.8
3,506,778 - +1.4
3,506,817 + -0.6
3,506,817 + -0.0
3,506,817 + +0.1
3,506,817 + +0.5
3,506,825 - +1.1
3,506,957 - +2.4
3,507,028 + Dsui_3268 0.15 -0.6
3,507,068 - +1.4
3,507,126 - +2.4
3,507,237 + Dsui_3268 0.30 -0.2
3,507,383 + Dsui_3268 0.41 +0.5
3,507,387 + Dsui_3268 0.41 -0.1
3,507,462 - +0.4
3,507,521 + +1.4
3,507,728 - +0.4
3,507,826 - Dsui_3268 0.72 +0.8
3,507,826 - Dsui_3268 0.72 +2.4
3,507,854 + Dsui_3268 0.74 -1.5
3,507,963 + Dsui_3268 0.82 +0.5
3,508,263 + -0.5
3,508,271 - -1.1
3,508,271 - +1.4
3,508,271 - +2.4
3,508,271 - +1.4
3,508,275 + -0.6
3,508,994 + -0.4
3,508,999 + +0.5
3,509,001 - -0.2
3,509,002 - +0.1
3,509,106 - -0.4
3,509,106 - +0.8

Or see this region's nucleotide sequence