Strain Fitness in Dechlorosoma suillum PS around Dsui_2966

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2964 and Dsui_2965 are separated by 28 nucleotidesDsui_2965 and Dsui_2966 overlap by 4 nucleotidesDsui_2966 and Dsui_2967 are separated by 41 nucleotides Dsui_2964: Dsui_2964 - precorrin-2 C20-methyltransferase, at 3,172,212 to 3,173,012 _2964 Dsui_2965: Dsui_2965 - cobalamin biosynthesis protein CbiG, at 3,173,041 to 3,173,826 _2965 Dsui_2966: Dsui_2966 - cobalamin biosynthesis protein CbiG, at 3,173,823 to 3,174,230 _2966 Dsui_2967: Dsui_2967 - precorrin-3B C17-methyltransferase, at 3,174,272 to 3,175,267 _2967 Position (kb) 3173 3174 3175Strain fitness (log2 ratio) -2 -1 0 1 2at 3172.914 kb on - strand, within Dsui_2964at 3173.016 kb on + strandat 3173.501 kb on + strand, within Dsui_2965at 3173.693 kb on - strandat 3173.707 kb on + strand, within Dsui_2965at 3173.710 kb on - strand, within Dsui_2965at 3173.829 kb on - strandat 3173.940 kb on - strandat 3173.965 kb on + strand, within Dsui_2966at 3173.965 kb on + strand, within Dsui_2966at 3174.018 kb on + strand, within Dsui_2966at 3174.021 kb on - strandat 3174.057 kb on + strand, within Dsui_2966at 3174.299 kb on + strandat 3174.306 kb on - strandat 3174.476 kb on + strand, within Dsui_2967at 3174.505 kb on - strand, within Dsui_2967at 3174.505 kb on - strand, within Dsui_2967at 3174.694 kb on - strandat 3174.777 kb on - strandat 3174.791 kb on + strand, within Dsui_2967at 3174.796 kb on + strand, within Dsui_2967at 3174.802 kb on + strand, within Dsui_2967at 3174.805 kb on - strandat 3174.967 kb on + strand, within Dsui_2967at 3175.014 kb on + strand, within Dsui_2967at 3175.022 kb on - strand, within Dsui_2967at 3175.028 kb on + strand, within Dsui_2967at 3175.028 kb on + strand, within Dsui_2967at 3175.036 kb on - strand, within Dsui_2967at 3175.065 kb on - strand, within Dsui_2967at 3175.115 kb on + strand, within Dsui_2967at 3175.137 kb on - strand, within Dsui_2967

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,172,914 - Dsui_2964 0.88 -0.8
3,173,016 + -0.2
3,173,501 + Dsui_2965 0.59 +0.9
3,173,693 - +1.4
3,173,707 + Dsui_2965 0.85 -0.8
3,173,710 - Dsui_2965 0.85 -1.1
3,173,829 - -0.2
3,173,940 - +1.4
3,173,965 + Dsui_2966 0.35 -1.2
3,173,965 + Dsui_2966 0.35 -1.2
3,174,018 + Dsui_2966 0.48 +0.6
3,174,021 - +0.8
3,174,057 + Dsui_2966 0.57 -2.5
3,174,299 + +1.2
3,174,306 - +1.4
3,174,476 + Dsui_2967 0.20 -0.5
3,174,505 - Dsui_2967 0.23 +1.1
3,174,505 - Dsui_2967 0.23 +1.4
3,174,694 - +0.4
3,174,777 - +1.8
3,174,791 + Dsui_2967 0.52 -0.7
3,174,796 + Dsui_2967 0.53 +0.1
3,174,802 + Dsui_2967 0.53 +0.2
3,174,805 - +2.4
3,174,967 + Dsui_2967 0.70 +0.7
3,175,014 + Dsui_2967 0.74 +0.0
3,175,022 - Dsui_2967 0.75 +0.5
3,175,028 + Dsui_2967 0.76 -0.2
3,175,028 + Dsui_2967 0.76 +1.2
3,175,036 - Dsui_2967 0.77 -0.4
3,175,065 - Dsui_2967 0.80 +0.7
3,175,115 + Dsui_2967 0.85 -0.2
3,175,137 - Dsui_2967 0.87 -0.9

Or see this region's nucleotide sequence