Strain Fitness in Dechlorosoma suillum PS around Dsui_2953

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2952 and Dsui_2953 are separated by 8 nucleotidesDsui_2953 and Dsui_2954 are separated by 257 nucleotides Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300 _2952 Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703 _2953 Dsui_2954: Dsui_2954 - acyl-CoA hydrolase, at 3,162,961 to 3,163,830 _2954 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -1 0 1 2 3at 3160.311 kb on - strand, within Dsui_2952at 3160.322 kb on - strandat 3160.364 kb on + strandat 3160.368 kb on - strand, within Dsui_2952at 3160.378 kb on - strand, within Dsui_2952at 3160.521 kb on + strand, within Dsui_2952at 3160.539 kb on - strand, within Dsui_2952at 3160.570 kb on - strand, within Dsui_2952at 3160.723 kb on + strandat 3160.733 kb on + strandat 3160.814 kb on - strand, within Dsui_2952at 3160.826 kb on + strandat 3160.834 kb on - strand, within Dsui_2952at 3160.834 kb on - strand, within Dsui_2952at 3160.931 kb on - strand, within Dsui_2952at 3160.983 kb on - strand, within Dsui_2952at 3161.042 kb on - strand, within Dsui_2952at 3161.054 kb on - strandat 3161.108 kb on - strand, within Dsui_2952at 3161.181 kb on - strandat 3161.187 kb on - strandat 3161.276 kb on - strandat 3161.276 kb on - strandat 3161.430 kb on + strandat 3161.660 kb on - strand, within Dsui_2953at 3161.734 kb on - strand, within Dsui_2953at 3161.759 kb on - strand, within Dsui_2953at 3161.831 kb on + strandat 3161.846 kb on - strand, within Dsui_2953at 3161.856 kb on - strand, within Dsui_2953at 3161.856 kb on - strand, within Dsui_2953at 3161.910 kb on - strand, within Dsui_2953at 3161.971 kb on - strand, within Dsui_2953at 3161.971 kb on - strand, within Dsui_2953at 3161.978 kb on - strand, within Dsui_2953at 3162.028 kb on + strandat 3162.033 kb on - strand, within Dsui_2953at 3162.118 kb on + strandat 3162.292 kb on - strand, within Dsui_2953at 3162.460 kb on + strandat 3162.528 kb on - strand, within Dsui_2953at 3162.533 kb on + strandat 3162.588 kb on + strandat 3162.680 kb on + strandat 3162.688 kb on - strandat 3162.716 kb on + strandat 3162.748 kb on - strandat 3162.788 kb on + strandat 3162.943 kb on - strandat 3162.959 kb on + strandat 3163.007 kb on - strandat 3163.062 kb on + strandat 3163.400 kb on - strandat 3163.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,160,311 - Dsui_2952 0.25 +0.2
3,160,322 - -0.2
3,160,364 + +1.4
3,160,368 - Dsui_2952 0.29 -1.2
3,160,378 - Dsui_2952 0.30 +0.3
3,160,521 + Dsui_2952 0.41 +0.4
3,160,539 - Dsui_2952 0.42 -0.0
3,160,570 - Dsui_2952 0.45 -0.2
3,160,723 + +1.4
3,160,733 + +1.4
3,160,814 - Dsui_2952 0.63 +0.8
3,160,826 + +1.4
3,160,834 - Dsui_2952 0.65 -0.2
3,160,834 - Dsui_2952 0.65 +0.8
3,160,931 - Dsui_2952 0.72 +1.1
3,160,983 - Dsui_2952 0.76 +0.7
3,161,042 - Dsui_2952 0.80 -0.8
3,161,054 - -0.2
3,161,108 - Dsui_2952 0.85 -0.2
3,161,181 - +0.7
3,161,187 - -0.9
3,161,276 - +1.4
3,161,276 - -0.2
3,161,430 + -1.0
3,161,660 - Dsui_2953 0.25 -0.9
3,161,734 - Dsui_2953 0.30 -1.2
3,161,759 - Dsui_2953 0.32 -1.5
3,161,831 + +3.4
3,161,846 - Dsui_2953 0.38 -0.9
3,161,856 - Dsui_2953 0.39 -1.1
3,161,856 - Dsui_2953 0.39 +0.3
3,161,910 - Dsui_2953 0.43 -0.8
3,161,971 - Dsui_2953 0.47 +0.1
3,161,971 - Dsui_2953 0.47 +0.4
3,161,978 - Dsui_2953 0.48 -0.7
3,162,028 + +2.4
3,162,033 - Dsui_2953 0.52 -0.6
3,162,118 + +1.8
3,162,292 - Dsui_2953 0.70 +0.6
3,162,460 + +2.4
3,162,528 - Dsui_2953 0.87 +0.4
3,162,533 + +2.4
3,162,588 + -0.2
3,162,680 + +2.4
3,162,688 - -0.1
3,162,716 + +1.4
3,162,748 - +0.3
3,162,788 + +1.8
3,162,943 - +0.4
3,162,959 + +2.4
3,163,007 - +2.4
3,163,062 + +2.4
3,163,400 - +0.4
3,163,400 - +1.4

Or see this region's nucleotide sequence