Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2952 and Dsui_2953 are separated by 8 nucleotides Dsui_2953 and Dsui_2954 are separated by 257 nucleotides
Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300
_2952
Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703
_2953
Dsui_2954: Dsui_2954 - acyl-CoA hydrolase, at 3,162,961 to 3,163,830
_2954
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3160.311 kb on - strand, within Dsui_2952 at 3160.322 kb on - strand at 3160.364 kb on + strand at 3160.368 kb on - strand, within Dsui_2952 at 3160.378 kb on - strand, within Dsui_2952 at 3160.521 kb on + strand, within Dsui_2952 at 3160.539 kb on - strand, within Dsui_2952 at 3160.570 kb on - strand, within Dsui_2952 at 3160.723 kb on + strand at 3160.733 kb on + strand at 3160.814 kb on - strand, within Dsui_2952 at 3160.826 kb on + strand at 3160.834 kb on - strand, within Dsui_2952 at 3160.834 kb on - strand, within Dsui_2952 at 3160.931 kb on - strand, within Dsui_2952 at 3160.983 kb on - strand, within Dsui_2952 at 3161.042 kb on - strand, within Dsui_2952 at 3161.054 kb on - strand at 3161.108 kb on - strand, within Dsui_2952 at 3161.181 kb on - strand at 3161.187 kb on - strand at 3161.276 kb on - strand at 3161.276 kb on - strand at 3161.430 kb on + strand at 3161.660 kb on - strand, within Dsui_2953 at 3161.734 kb on - strand, within Dsui_2953 at 3161.759 kb on - strand, within Dsui_2953 at 3161.831 kb on + strand at 3161.846 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.910 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.978 kb on - strand, within Dsui_2953 at 3162.028 kb on + strand at 3162.033 kb on - strand, within Dsui_2953 at 3162.118 kb on + strand at 3162.292 kb on - strand, within Dsui_2953 at 3162.460 kb on + strand at 3162.528 kb on - strand, within Dsui_2953 at 3162.533 kb on + strand at 3162.588 kb on + strand at 3162.680 kb on + strand at 3162.688 kb on - strand at 3162.716 kb on + strand at 3162.748 kb on - strand at 3162.788 kb on + strand at 3162.943 kb on - strand at 3162.959 kb on + strand at 3163.007 kb on - strand at 3163.062 kb on + strand at 3163.400 kb on - strand at 3163.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,160,311 - Dsui_2952 0.25 +0.2 3,160,322 - -0.2 3,160,364 + +1.4 3,160,368 - Dsui_2952 0.29 -1.2 3,160,378 - Dsui_2952 0.30 +0.3 3,160,521 + Dsui_2952 0.41 +0.4 3,160,539 - Dsui_2952 0.42 -0.0 3,160,570 - Dsui_2952 0.45 -0.2 3,160,723 + +1.4 3,160,733 + +1.4 3,160,814 - Dsui_2952 0.63 +0.8 3,160,826 + +1.4 3,160,834 - Dsui_2952 0.65 -0.2 3,160,834 - Dsui_2952 0.65 +0.8 3,160,931 - Dsui_2952 0.72 +1.1 3,160,983 - Dsui_2952 0.76 +0.7 3,161,042 - Dsui_2952 0.80 -0.8 3,161,054 - -0.2 3,161,108 - Dsui_2952 0.85 -0.2 3,161,181 - +0.7 3,161,187 - -0.9 3,161,276 - +1.4 3,161,276 - -0.2 3,161,430 + -1.0 3,161,660 - Dsui_2953 0.25 -0.9 3,161,734 - Dsui_2953 0.30 -1.2 3,161,759 - Dsui_2953 0.32 -1.5 3,161,831 + +3.4 3,161,846 - Dsui_2953 0.38 -0.9 3,161,856 - Dsui_2953 0.39 -1.1 3,161,856 - Dsui_2953 0.39 +0.3 3,161,910 - Dsui_2953 0.43 -0.8 3,161,971 - Dsui_2953 0.47 +0.1 3,161,971 - Dsui_2953 0.47 +0.4 3,161,978 - Dsui_2953 0.48 -0.7 3,162,028 + +2.4 3,162,033 - Dsui_2953 0.52 -0.6 3,162,118 + +1.8 3,162,292 - Dsui_2953 0.70 +0.6 3,162,460 + +2.4 3,162,528 - Dsui_2953 0.87 +0.4 3,162,533 + +2.4 3,162,588 + -0.2 3,162,680 + +2.4 3,162,688 - -0.1 3,162,716 + +1.4 3,162,748 - +0.3 3,162,788 + +1.8 3,162,943 - +0.4 3,162,959 + +2.4 3,163,007 - +2.4 3,163,062 + +2.4 3,163,400 - +0.4 3,163,400 - +1.4
Or see this region's nucleotide sequence