Strain Fitness in Dechlorosoma suillum PS around Dsui_2911

Experiment: R2A with sodium pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2909 and Dsui_2910 are separated by 111 nucleotidesDsui_2910 and Dsui_2911 are separated by 5 nucleotidesDsui_2911 and Dsui_2912 are separated by 277 nucleotides Dsui_2909: Dsui_2909 - aspartate/tyrosine/aromatic aminotransferase, at 3,112,623 to 3,113,810 _2909 Dsui_2910: Dsui_2910 - hypothetical protein, at 3,113,922 to 3,114,293 _2910 Dsui_2911: Dsui_2911 - cation/cationic drug transporter, at 3,114,299 to 3,114,673 _2911 Dsui_2912: Dsui_2912 - putative xylanase/chitin deacetylase, at 3,114,951 to 3,115,859 _2912 Position (kb) 3114 3115Strain fitness (log2 ratio) -1 0 1 2 3 4at 3113.317 kb on - strand, within Dsui_2909at 3113.386 kb on + strandat 3113.394 kb on - strand, within Dsui_2909at 3113.476 kb on - strand, within Dsui_2909at 3113.476 kb on - strand, within Dsui_2909at 3113.491 kb on - strand, within Dsui_2909at 3113.501 kb on - strand, within Dsui_2909at 3113.656 kb on + strandat 3113.769 kb on - strandat 3113.793 kb on - strandat 3113.820 kb on - strandat 3113.853 kb on + strandat 3113.853 kb on + strandat 3113.861 kb on - strandat 3114.295 kb on - strandat 3114.441 kb on + strand, within Dsui_2911at 3114.458 kb on - strand, within Dsui_2911at 3114.488 kb on - strandat 3114.639 kb on + strandat 3114.645 kb on + strandat 3114.718 kb on + strandat 3114.725 kb on + strandat 3114.726 kb on - strandat 3114.738 kb on + strandat 3114.748 kb on - strandat 3114.748 kb on - strandat 3114.816 kb on - strandat 3114.872 kb on + strandat 3114.885 kb on + strandat 3114.893 kb on - strandat 3114.893 kb on - strandat 3114.898 kb on - strandat 3114.898 kb on - strandat 3114.961 kb on - strandat 3115.066 kb on + strand, within Dsui_2912at 3115.140 kb on + strand, within Dsui_2912at 3115.164 kb on + strand, within Dsui_2912at 3115.169 kb on + strand, within Dsui_2912at 3115.177 kb on - strandat 3115.177 kb on - strand, within Dsui_2912at 3115.177 kb on - strand, within Dsui_2912at 3115.298 kb on + strand, within Dsui_2912at 3115.302 kb on - strandat 3115.451 kb on - strand, within Dsui_2912at 3115.498 kb on + strand, within Dsui_2912at 3115.666 kb on + strand, within Dsui_2912

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
remove
3,113,317 - Dsui_2909 0.58 +0.1
3,113,386 + +2.4
3,113,394 - Dsui_2909 0.65 +0.2
3,113,476 - Dsui_2909 0.72 -0.1
3,113,476 - Dsui_2909 0.72 +0.1
3,113,491 - Dsui_2909 0.73 +0.2
3,113,501 - Dsui_2909 0.74 +0.1
3,113,656 + +1.4
3,113,769 - -0.4
3,113,793 - +0.3
3,113,820 - +0.2
3,113,853 + +2.5
3,113,853 + +1.5
3,113,861 - -0.0
3,114,295 - -0.1
3,114,441 + Dsui_2911 0.38 -1.1
3,114,458 - Dsui_2911 0.42 -0.4
3,114,488 - -0.1
3,114,639 + +0.1
3,114,645 + +0.2
3,114,718 + -0.2
3,114,725 + -0.0
3,114,726 - +1.1
3,114,738 + -0.1
3,114,748 - +2.5
3,114,748 - +0.1
3,114,816 - +0.2
3,114,872 + -0.6
3,114,885 + +0.1
3,114,893 - +4.0
3,114,893 - +2.5
3,114,898 - +1.5
3,114,898 - +0.5
3,114,961 - +1.9
3,115,066 + Dsui_2912 0.13 -0.1
3,115,140 + Dsui_2912 0.21 +0.7
3,115,164 + Dsui_2912 0.23 +0.3
3,115,169 + Dsui_2912 0.24 +0.3
3,115,177 - -0.1
3,115,177 - Dsui_2912 0.25 +0.7
3,115,177 - Dsui_2912 0.25 -1.4
3,115,298 + Dsui_2912 0.38 +1.5
3,115,302 - +2.5
3,115,451 - Dsui_2912 0.55 -0.5
3,115,498 + Dsui_2912 0.60 +0.5
3,115,666 + Dsui_2912 0.79 -0.2

Or see this region's nucleotide sequence