Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2909 and Dsui_2910 are separated by 111 nucleotides Dsui_2910 and Dsui_2911 are separated by 5 nucleotides Dsui_2911 and Dsui_2912 are separated by 277 nucleotides
Dsui_2909: Dsui_2909 - aspartate/tyrosine/aromatic aminotransferase, at 3,112,623 to 3,113,810
_2909
Dsui_2910: Dsui_2910 - hypothetical protein, at 3,113,922 to 3,114,293
_2910
Dsui_2911: Dsui_2911 - cation/cationic drug transporter, at 3,114,299 to 3,114,673
_2911
Dsui_2912: Dsui_2912 - putative xylanase/chitin deacetylase, at 3,114,951 to 3,115,859
_2912
Position (kb)
3114
3115 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3113.317 kb on - strand, within Dsui_2909 at 3113.386 kb on + strand at 3113.394 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.491 kb on - strand, within Dsui_2909 at 3113.501 kb on - strand, within Dsui_2909 at 3113.656 kb on + strand at 3113.769 kb on - strand at 3113.793 kb on - strand at 3113.820 kb on - strand at 3113.853 kb on + strand at 3113.853 kb on + strand at 3113.861 kb on - strand at 3114.295 kb on - strand at 3114.441 kb on + strand, within Dsui_2911 at 3114.458 kb on - strand, within Dsui_2911 at 3114.488 kb on - strand at 3114.639 kb on + strand at 3114.645 kb on + strand at 3114.718 kb on + strand at 3114.725 kb on + strand at 3114.726 kb on - strand at 3114.738 kb on + strand at 3114.748 kb on - strand at 3114.748 kb on - strand at 3114.816 kb on - strand at 3114.872 kb on + strand at 3114.885 kb on + strand at 3114.893 kb on - strand at 3114.893 kb on - strand at 3114.898 kb on - strand at 3114.898 kb on - strand at 3114.961 kb on - strand at 3115.066 kb on + strand, within Dsui_2912 at 3115.140 kb on + strand, within Dsui_2912 at 3115.164 kb on + strand, within Dsui_2912 at 3115.169 kb on + strand, within Dsui_2912 at 3115.177 kb on - strand at 3115.177 kb on - strand, within Dsui_2912 at 3115.177 kb on - strand, within Dsui_2912 at 3115.298 kb on + strand, within Dsui_2912 at 3115.302 kb on - strand at 3115.451 kb on - strand, within Dsui_2912 at 3115.498 kb on + strand, within Dsui_2912 at 3115.666 kb on + strand, within Dsui_2912
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,113,317 - Dsui_2909 0.58 +0.1 3,113,386 + +2.4 3,113,394 - Dsui_2909 0.65 +0.2 3,113,476 - Dsui_2909 0.72 -0.1 3,113,476 - Dsui_2909 0.72 +0.1 3,113,491 - Dsui_2909 0.73 +0.2 3,113,501 - Dsui_2909 0.74 +0.1 3,113,656 + +1.4 3,113,769 - -0.4 3,113,793 - +0.3 3,113,820 - +0.2 3,113,853 + +2.5 3,113,853 + +1.5 3,113,861 - -0.0 3,114,295 - -0.1 3,114,441 + Dsui_2911 0.38 -1.1 3,114,458 - Dsui_2911 0.42 -0.4 3,114,488 - -0.1 3,114,639 + +0.1 3,114,645 + +0.2 3,114,718 + -0.2 3,114,725 + -0.0 3,114,726 - +1.1 3,114,738 + -0.1 3,114,748 - +2.5 3,114,748 - +0.1 3,114,816 - +0.2 3,114,872 + -0.6 3,114,885 + +0.1 3,114,893 - +4.0 3,114,893 - +2.5 3,114,898 - +1.5 3,114,898 - +0.5 3,114,961 - +1.9 3,115,066 + Dsui_2912 0.13 -0.1 3,115,140 + Dsui_2912 0.21 +0.7 3,115,164 + Dsui_2912 0.23 +0.3 3,115,169 + Dsui_2912 0.24 +0.3 3,115,177 - -0.1 3,115,177 - Dsui_2912 0.25 +0.7 3,115,177 - Dsui_2912 0.25 -1.4 3,115,298 + Dsui_2912 0.38 +1.5 3,115,302 - +2.5 3,115,451 - Dsui_2912 0.55 -0.5 3,115,498 + Dsui_2912 0.60 +0.5 3,115,666 + Dsui_2912 0.79 -0.2
Or see this region's nucleotide sequence