Strain Fitness in Dechlorosoma suillum PS around Dsui_2811

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2809 and Dsui_2810 overlap by 4 nucleotidesDsui_2810 and Dsui_2811 are separated by 19 nucleotidesDsui_2811 and Dsui_2812 overlap by 4 nucleotides Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858 _2809 Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778 _2810 Dsui_2811: Dsui_2811 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 2,984,798 to 2,985,571 _2811 Dsui_2812: Dsui_2812 - conserved hypothetical integral membrane protein, at 2,985,568 to 2,986,683 _2812 Position (kb) 2984 2985 2986Strain fitness (log2 ratio) -1 0 1 2at 2983.827 kb on - strandat 2983.861 kb on - strandat 2984.498 kb on - strand, within Dsui_2810at 2984.511 kb on + strandat 2984.718 kb on - strandat 2984.734 kb on - strandat 2984.737 kb on + strandat 2984.803 kb on - strandat 2984.994 kb on - strand, within Dsui_2811at 2985.106 kb on - strandat 2985.161 kb on - strand, within Dsui_2811at 2985.161 kb on - strand, within Dsui_2811at 2985.281 kb on - strand, within Dsui_2811at 2985.293 kb on - strand, within Dsui_2811at 2985.438 kb on + strandat 2985.609 kb on - strandat 2985.646 kb on - strandat 2985.674 kb on - strandat 2985.685 kb on + strandat 2985.712 kb on + strandat 2985.793 kb on - strand, within Dsui_2812at 2985.812 kb on + strandat 2985.847 kb on - strand, within Dsui_2812at 2985.902 kb on + strandat 2985.927 kb on + strandat 2986.149 kb on - strand, within Dsui_2812at 2986.155 kb on - strand, within Dsui_2812at 2986.160 kb on - strand, within Dsui_2812at 2986.198 kb on - strand, within Dsui_2812at 2986.325 kb on - strand, within Dsui_2812at 2986.500 kb on + strandat 2986.508 kb on - strand, within Dsui_2812at 2986.508 kb on - strandat 2986.518 kb on + strand, within Dsui_2812

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,983,827 - +0.3
2,983,861 - -0.2
2,984,498 - Dsui_2810 0.70 +0.5
2,984,511 + +2.5
2,984,718 - -0.7
2,984,734 - +0.3
2,984,737 + +2.5
2,984,803 - -1.5
2,984,994 - Dsui_2811 0.25 -0.5
2,985,106 - +1.2
2,985,161 - Dsui_2811 0.47 +0.2
2,985,161 - Dsui_2811 0.47 -0.8
2,985,281 - Dsui_2811 0.62 +0.3
2,985,293 - Dsui_2811 0.64 -1.0
2,985,438 + +2.5
2,985,609 - -0.3
2,985,646 - +0.8
2,985,674 - +0.3
2,985,685 + +2.5
2,985,712 + +2.5
2,985,793 - Dsui_2812 0.20 -0.6
2,985,812 + +1.5
2,985,847 - Dsui_2812 0.25 +1.2
2,985,902 + +0.2
2,985,927 + +0.5
2,986,149 - Dsui_2812 0.52 +0.8
2,986,155 - Dsui_2812 0.53 -0.3
2,986,160 - Dsui_2812 0.53 -1.2
2,986,198 - Dsui_2812 0.56 -0.0
2,986,325 - Dsui_2812 0.68 -0.4
2,986,500 + +2.1
2,986,508 - Dsui_2812 0.84 +0.8
2,986,508 - +0.9
2,986,518 + Dsui_2812 0.85 -1.3

Or see this region's nucleotide sequence