Strain Fitness in Dechlorosoma suillum PS around Dsui_2777

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2775 and Dsui_2776 are separated by 25 nucleotidesDsui_2776 and Dsui_2777 are separated by 55 nucleotidesDsui_2777 and Dsui_2778 are separated by 142 nucleotidesDsui_2778 and Dsui_2779 are separated by 183 nucleotides Dsui_2775: Dsui_2775 - hypothetical protein, at 2,938,159 to 2,938,806 _2775 Dsui_2776: Dsui_2776 - putative pyrophosphatase, at 2,938,832 to 2,939,236 _2776 Dsui_2777: Dsui_2777 - aminoacyl-histidine dipeptidase, at 2,939,292 to 2,940,860 _2777 Dsui_2778: Dsui_2778 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,941,003 to 2,941,524 _2778 Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797 _2779 Position (kb) 2939 2940 2941Strain fitness (log2 ratio) -1 0 1 2 3at 2938.439 kb on + strand, within Dsui_2775at 2938.454 kb on + strand, within Dsui_2775at 2938.529 kb on + strand, within Dsui_2775at 2938.537 kb on - strand, within Dsui_2775at 2938.598 kb on + strand, within Dsui_2775at 2938.801 kb on + strandat 2939.080 kb on + strandat 2939.160 kb on + strandat 2939.231 kb on + strandat 2939.231 kb on + strandat 2939.239 kb on - strandat 2939.239 kb on - strandat 2939.239 kb on - strandat 2939.240 kb on - strandat 2939.247 kb on + strandat 2939.332 kb on + strandat 2939.347 kb on + strandat 2939.414 kb on + strandat 2939.462 kb on - strandat 2939.675 kb on + strand, within Dsui_2777at 2939.685 kb on + strand, within Dsui_2777at 2939.765 kb on - strandat 2939.832 kb on + strand, within Dsui_2777at 2939.867 kb on + strand, within Dsui_2777at 2939.915 kb on + strand, within Dsui_2777at 2939.918 kb on + strand, within Dsui_2777at 2939.924 kb on + strand, within Dsui_2777at 2940.269 kb on + strand, within Dsui_2777at 2940.555 kb on - strand, within Dsui_2777at 2940.565 kb on - strand, within Dsui_2777at 2940.641 kb on + strand, within Dsui_2777at 2940.646 kb on + strand, within Dsui_2777at 2940.649 kb on - strandat 2940.674 kb on + strand, within Dsui_2777at 2940.681 kb on - strandat 2940.957 kb on + strandat 2940.959 kb on + strandat 2941.192 kb on - strandat 2941.240 kb on - strand, within Dsui_2778at 2941.316 kb on + strand, within Dsui_2778at 2941.335 kb on + strand, within Dsui_2778at 2941.352 kb on + strand, within Dsui_2778at 2941.683 kb on - strandat 2941.684 kb on - strandat 2941.769 kb on + strandat 2941.793 kb on + strandat 2941.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,938,439 + Dsui_2775 0.43 +0.6
2,938,454 + Dsui_2775 0.46 +0.1
2,938,529 + Dsui_2775 0.57 -0.3
2,938,537 - Dsui_2775 0.58 -1.0
2,938,598 + Dsui_2775 0.68 +1.2
2,938,801 + +0.9
2,939,080 + +2.5
2,939,160 + +1.5
2,939,231 + -0.6
2,939,231 + +0.8
2,939,239 - +0.9
2,939,239 - +0.1
2,939,239 - -0.3
2,939,240 - -0.8
2,939,247 + -0.3
2,939,332 + -0.1
2,939,347 + +0.0
2,939,414 + +0.1
2,939,462 - +0.9
2,939,675 + Dsui_2777 0.24 +1.5
2,939,685 + Dsui_2777 0.25 -0.1
2,939,765 - +1.5
2,939,832 + Dsui_2777 0.34 -0.9
2,939,867 + Dsui_2777 0.37 +0.7
2,939,915 + Dsui_2777 0.40 +0.0
2,939,918 + Dsui_2777 0.40 +0.7
2,939,924 + Dsui_2777 0.40 -0.2
2,940,269 + Dsui_2777 0.62 -0.4
2,940,555 - Dsui_2777 0.80 +0.9
2,940,565 - Dsui_2777 0.81 +0.7
2,940,641 + Dsui_2777 0.86 -0.3
2,940,646 + Dsui_2777 0.86 +0.1
2,940,649 - +1.5
2,940,674 + Dsui_2777 0.88 -0.3
2,940,681 - +2.5
2,940,957 + +0.1
2,940,959 + +0.5
2,941,192 - +3.5
2,941,240 - Dsui_2778 0.45 +0.4
2,941,316 + Dsui_2778 0.60 -0.1
2,941,335 + Dsui_2778 0.64 -0.8
2,941,352 + Dsui_2778 0.67 +0.4
2,941,683 - +1.2
2,941,684 - -0.5
2,941,769 + +0.3
2,941,793 + +1.9
2,941,799 + +0.2

Or see this region's nucleotide sequence