Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2775 and Dsui_2776 are separated by 25 nucleotides Dsui_2776 and Dsui_2777 are separated by 55 nucleotides Dsui_2777 and Dsui_2778 are separated by 142 nucleotides Dsui_2778 and Dsui_2779 are separated by 183 nucleotides
Dsui_2775: Dsui_2775 - hypothetical protein, at 2,938,159 to 2,938,806
_2775
Dsui_2776: Dsui_2776 - putative pyrophosphatase, at 2,938,832 to 2,939,236
_2776
Dsui_2777: Dsui_2777 - aminoacyl-histidine dipeptidase, at 2,939,292 to 2,940,860
_2777
Dsui_2778: Dsui_2778 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,941,003 to 2,941,524
_2778
Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797
_2779
Position (kb)
2939
2940
2941 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2938.439 kb on + strand, within Dsui_2775 at 2938.454 kb on + strand, within Dsui_2775 at 2938.529 kb on + strand, within Dsui_2775 at 2938.537 kb on - strand, within Dsui_2775 at 2938.598 kb on + strand, within Dsui_2775 at 2938.801 kb on + strand at 2939.080 kb on + strand at 2939.160 kb on + strand at 2939.231 kb on + strand at 2939.231 kb on + strand at 2939.239 kb on - strand at 2939.239 kb on - strand at 2939.239 kb on - strand at 2939.240 kb on - strand at 2939.247 kb on + strand at 2939.332 kb on + strand at 2939.347 kb on + strand at 2939.414 kb on + strand at 2939.462 kb on - strand at 2939.675 kb on + strand, within Dsui_2777 at 2939.685 kb on + strand, within Dsui_2777 at 2939.765 kb on - strand at 2939.832 kb on + strand, within Dsui_2777 at 2939.867 kb on + strand, within Dsui_2777 at 2939.915 kb on + strand, within Dsui_2777 at 2939.918 kb on + strand, within Dsui_2777 at 2939.924 kb on + strand, within Dsui_2777 at 2940.269 kb on + strand, within Dsui_2777 at 2940.555 kb on - strand, within Dsui_2777 at 2940.565 kb on - strand, within Dsui_2777 at 2940.641 kb on + strand, within Dsui_2777 at 2940.646 kb on + strand, within Dsui_2777 at 2940.649 kb on - strand at 2940.674 kb on + strand, within Dsui_2777 at 2940.681 kb on - strand at 2940.957 kb on + strand at 2940.959 kb on + strand at 2941.192 kb on - strand at 2941.240 kb on - strand, within Dsui_2778 at 2941.316 kb on + strand, within Dsui_2778 at 2941.335 kb on + strand, within Dsui_2778 at 2941.352 kb on + strand, within Dsui_2778 at 2941.683 kb on - strand at 2941.684 kb on - strand at 2941.769 kb on + strand at 2941.793 kb on + strand at 2941.799 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 2,938,439 + Dsui_2775 0.43 +0.6 2,938,454 + Dsui_2775 0.46 +0.1 2,938,529 + Dsui_2775 0.57 -0.3 2,938,537 - Dsui_2775 0.58 -1.0 2,938,598 + Dsui_2775 0.68 +1.2 2,938,801 + +0.9 2,939,080 + +2.5 2,939,160 + +1.5 2,939,231 + -0.6 2,939,231 + +0.8 2,939,239 - +0.9 2,939,239 - +0.1 2,939,239 - -0.3 2,939,240 - -0.8 2,939,247 + -0.3 2,939,332 + -0.1 2,939,347 + +0.0 2,939,414 + +0.1 2,939,462 - +0.9 2,939,675 + Dsui_2777 0.24 +1.5 2,939,685 + Dsui_2777 0.25 -0.1 2,939,765 - +1.5 2,939,832 + Dsui_2777 0.34 -0.9 2,939,867 + Dsui_2777 0.37 +0.7 2,939,915 + Dsui_2777 0.40 +0.0 2,939,918 + Dsui_2777 0.40 +0.7 2,939,924 + Dsui_2777 0.40 -0.2 2,940,269 + Dsui_2777 0.62 -0.4 2,940,555 - Dsui_2777 0.80 +0.9 2,940,565 - Dsui_2777 0.81 +0.7 2,940,641 + Dsui_2777 0.86 -0.3 2,940,646 + Dsui_2777 0.86 +0.1 2,940,649 - +1.5 2,940,674 + Dsui_2777 0.88 -0.3 2,940,681 - +2.5 2,940,957 + +0.1 2,940,959 + +0.5 2,941,192 - +3.5 2,941,240 - Dsui_2778 0.45 +0.4 2,941,316 + Dsui_2778 0.60 -0.1 2,941,335 + Dsui_2778 0.64 -0.8 2,941,352 + Dsui_2778 0.67 +0.4 2,941,683 - +1.2 2,941,684 - -0.5 2,941,769 + +0.3 2,941,793 + +1.9 2,941,799 + +0.2
Or see this region's nucleotide sequence